Detailed information NTG1114822

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: ABR2090_RS09900
• Genome accession: NZ_LN868200
• Coordinates: 2071657..2072358 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594585.1
• Uniprot ID: A0A009Q1Y5
• Organism: Acinetobacter baumannii isolate R2090
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2066657..2077358

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABR2090_RS09870 (ABR2090_1983)	-	2066964..2067407 (-)	444	WP_001246675.1	SRPBCC family protein	-
ABR2090_RS09875 (ABR2090_1984)	tadA	2067477..2067980 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
ABR2090_RS09880 (ABR2090_1985)	-	2067987..2069111 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
ABR2090_RS09885 (ABR2090_1986)	ung	2069108..2069821 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
ABR2090_RS09890 (ABR2090_1987)	-	2069872..2070468 (-)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
ABR2090_RS09895 (ABR2090_1988)	gspK	2070698..2071657 (-)	960	WP_000301468.1	type II secretion system minor pseudopilin GspK	-
ABR2090_RS09900 (ABR2090_1989)	xcpW	2071657..2072358 (-)	702	WP_000594585.1	type II secretion system minor pseudopilin GspJ	Machinery gene
ABR2090_RS09905 (ABR2090_1990)	xcpV	2072358..2072738 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
ABR2090_RS09910 (ABR2090_1991)	-	2072728..2073282 (-)	555	WP_004841361.1	type II secretion system protein	-
ABR2090_RS09915 (ABR2090_1992)	-	2073292..2073900 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
ABR2090_RS09920 (ABR2090_1993)	-	2073938..2074711 (-)	774	WP_000497298.1	TatD family hydrolase	-
ABR2090_RS09925 (ABR2090_1994)	-	2074729..2075070 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
ABR2090_RS09930 (ABR2090_1995)	-	2075082..2076062 (-)	981	WP_043960937.1	DNA polymerase III subunit delta'	-
ABR2090_RS09935 (ABR2090_1996)	kdsB	2076074..2076835 (-)	762	WP_000680700.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26595.57 Da
• Isoelectric Point: 9.5501

>NTDB_id=1114822 ABR2090_RS09900 WP_000594585.1 2071657..2072358(-) (xcpW) [Acinetobacter baumannii isolate R2090]
MIKNKYIHIRSIASRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=1114822 ABR2090_RS09900 WP_000594585.1 2071657..2072358(-) (xcpW) [Acinetobacter baumannii isolate R2090]
ATGATAAAAAATAAATATATTCATATCCGAAGCATTGCTTCTCGTCTTGCGGCGCGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009Q1Y5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	100	100	1