Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ABR2090_RS01630 Genome accession   NZ_LN868200
Coordinates   339788..340429 (+) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter baumannii isolate R2090     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 334788..345429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABR2090_RS01610 (ABR2090_0323) - 334836..335168 (+) 333 WP_000169598.1 hypothetical protein -
  ABR2090_RS01615 (ABR2090_0324) - 335171..335995 (+) 825 WP_001990541.1 putative RNA methyltransferase -
  ABR2090_RS01620 (ABR2090_0325) ponA 336013..338568 (-) 2556 WP_000736674.1 penicillin-binding protein PBP1a -
  ABR2090_RS01625 (ABR2090_0326) pilM 338730..339788 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  ABR2090_RS01630 (ABR2090_0327) pilN 339788..340429 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  ABR2090_RS01635 (ABR2090_0328) pilO 340426..341166 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABR2090_RS01640 (ABR2090_0329) pilP 341177..341704 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  ABR2090_RS01645 (ABR2090_0330) pilQ 341767..343932 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  ABR2090_RS01650 (ABR2090_0331) aroK 343944..344513 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=1114802 ABR2090_RS01630 WP_000201227.1 339788..340429(+) (pilN) [Acinetobacter baumannii isolate R2090]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1114802 ABR2090_RS01630 WP_000201227.1 339788..340429(+) (pilN) [Acinetobacter baumannii isolate R2090]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCCGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709

Multiple sequence alignment