Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BN1726_RS08250 Genome accession   NZ_LN824140
Coordinates   1804566..1806395 (-) Length   609 a.a.
NCBI ID   WP_032684157.1    Uniprot ID   A0A087B7V3
Organism   Bifidobacterium longum subsp. infantis strain CECT 7210     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1799566..1811395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BN1726_RS12095 - 1799755..1800132 (+) 378 WP_012472100.1 hypothetical protein -
  BN1726_RS08230 rsmI 1800159..1801169 (-) 1011 WP_015512102.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BN1726_RS08240 - 1801866..1803284 (-) 1419 WP_049137425.1 MFS transporter -
  BN1726_RS08245 - 1803223..1804413 (+) 1191 WP_373367016.1 FAD:protein FMN transferase -
  BN1726_RS08250 rcrQ 1804566..1806395 (-) 1830 WP_032684157.1 ABC transporter ATP-binding protein Regulator
  BN1726_RS08260 rcrP 1806610..1808481 (-) 1872 WP_013582997.1 ABC transporter ATP-binding protein Regulator
  BN1726_RS08270 - 1808668..1809189 (-) 522 WP_032684783.1 MarR family winged helix-turn-helix transcriptional regulator -
  BN1726_RS08275 - 1809551..1810114 (+) 564 WP_007055052.1 BRO family protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 66671.01 Da        Isoelectric Point: 5.9522

>NTDB_id=1114078 BN1726_RS08250 WP_032684157.1 1804566..1806395(-) (rcrQ) [Bifidobacterium longum subsp. infantis strain CECT 7210]
MPRGPMGGRRAVEEPHDFGKVMGKLVNYCRNYLPVIIIALILGAAGTVCQIVGPDKLKDMTNEIVKGLPAIVNGRPVMNS
VDFGTVGHIAWTLVALYVGYAVLGYVQSWMMANVTQRTAQRLRESISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSVTLFVGALVMMFYNNVIMTLCAIGASLIGLIIMMAIMKSSQKYFARQQMALGDVNGHVEEMYAGHLIVK
AYNGEADSIRRFEKYNSDLYESGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALALDGQIEFGVIVAFMMYVRLFTQPL
AQFAQAFQNLQRCAAAAERVFGFLEEPEMEDESGKSALLGTNGHEVKGDVEFSHVQFGYEPGKPIIHDFSASVKAGQKVA
IVGPTGAGKTTMVNLLMRFYEISGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKPGVTDKQIEDAC
KAVGLDHFIRSLPDGYDTVLDDKSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTSFVI
AHRLSTIRDADMILVMNHGDVIERGTHDELLAAGGFYADLYNSQFALAD

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=1114078 BN1726_RS08250 WP_032684157.1 1804566..1806395(-) (rcrQ) [Bifidobacterium longum subsp. infantis strain CECT 7210]
ATGCCAAGAGGACCAATGGGCGGCAGGCGTGCCGTCGAAGAGCCCCATGATTTCGGCAAAGTCATGGGCAAACTCGTGAA
CTACTGCCGCAACTATCTTCCCGTCATCATCATCGCGCTCATCCTGGGCGCGGCCGGCACCGTCTGCCAGATCGTCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCGTCAAAGGTCTGCCCGCCATCGTTAACGGCAGACCGGTGATGAACTCG
GTAGATTTCGGCACGGTGGGCCACATCGCCTGGACTTTGGTGGCCCTGTACGTGGGCTACGCCGTGCTCGGCTACGTGCA
AAGCTGGATGATGGCCAACGTCACCCAGCGCACCGCCCAGCGACTGCGCGAGTCCATCTCGGTCAAAATCAACAAACTGC
CGCTCAAATACTTCGACAAGGTTAGCTACGGCGACGTGCTGTCGCGCATAACCAACGATGTGGACGCCATCGGCCAGACG
CTGGGCCAGTCGCTCGGCTCGCTGATTACCTCGGTGACGCTGTTCGTGGGCGCGCTGGTGATGATGTTCTACAACAACGT
GATCATGACCCTGTGCGCCATCGGTGCCAGCCTCATCGGCCTGATCATCATGATGGCCATCATGAAGTCCTCCCAGAAGT
ACTTCGCCCGGCAGCAGATGGCGCTGGGTGACGTCAACGGCCACGTGGAGGAGATGTACGCCGGTCACCTCATCGTCAAG
GCATACAACGGCGAGGCCGATTCGATTCGTCGCTTCGAGAAGTACAACTCGGACCTCTACGAGTCCGGCTGGAAGTCGCA
GTTCCTCTCCGGCCTGATGATGCCGCTCATGAATTTCGTGGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTGGGCGCGG
CGCTCGCGCTCGACGGGCAGATCGAGTTCGGCGTGATCGTGGCGTTCATGATGTATGTCCGCCTGTTCACCCAGCCGTTG
GCGCAGTTCGCCCAGGCCTTCCAGAACCTGCAGCGTTGCGCGGCGGCCGCCGAACGCGTGTTCGGCTTCCTTGAGGAGCC
GGAGATGGAGGACGAATCCGGCAAGTCCGCTTTGCTTGGGACCAACGGCCACGAAGTGAAGGGCGACGTGGAATTCAGCC
ACGTACAGTTCGGCTACGAACCGGGCAAGCCGATCATCCACGACTTCTCCGCCTCCGTCAAGGCCGGGCAGAAGGTCGCC
ATCGTCGGCCCGACCGGTGCCGGCAAGACCACCATGGTCAACCTGCTCATGCGCTTCTATGAGATTTCCGGCGGCTCGAT
CGCGATTGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAACGTGCACGACCAGTTCTCCATGGTGCTGCAGGATACGT
GGGTGTTCCGCGGCACTGTGCGCGAGAACATCGCCTACTCCAAGCCCGGCGTGACCGACAAGCAGATCGAGGATGCGTGC
AAGGCCGTGGGCCTCGACCACTTCATCCGCTCGCTGCCGGACGGCTATGACACCGTGCTCGACGACAAGTCGTCGCTCTC
CCAGGGCCAGAAGCAGCTGCTCACCATCGCCCGTGCGATGGTGCAGGACGCGCCGATTCTGATTCTCGACGAGGCCACCT
CATCGGTCGATACCCGCACCGAAGAGCTGATCCAGAAGGCCATGGACGCGCTGACCGTGGGGCGTACGAGCTTTGTGATC
GCGCACCGCCTCTCCACGATTCGCGACGCCGACATGATTCTCGTCATGAACCACGGCGACGTGATCGAGCGCGGCACGCA
TGATGAACTGCTGGCGGCGGGCGGTTTTTACGCCGACCTCTACAACAGCCAGTTCGCGCTTGCTGACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-320)

ABC transporter (ABC_tran)

(387-534)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A087B7V3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.53

96.059

0.524

Multiple sequence alignment