Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   LACPI_RS10200 Genome accession   NZ_LN774769
Coordinates   2105770..2107542 (-) Length   590 a.a.
NCBI ID   WP_047916210.1    Uniprot ID   -
Organism   Lactococcus piscium MKFS47     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2100770..2112542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LACPI_RS10180 (LACPI_2008) - 2102269..2102568 (-) 300 WP_047916206.1 bacteriocin immunity protein -
  LACPI_RS10185 (LACPI_2009) - 2102631..2102975 (-) 345 WP_047916207.1 winged helix-turn-helix transcriptional regulator -
  LACPI_RS10190 (LACPI_2010) - 2103085..2103822 (+) 738 WP_047916208.1 NADPH-dependent oxidoreductase -
  LACPI_RS10195 (LACPI_2011) rcrQ 2103905..2105770 (-) 1866 WP_047916209.1 ABC transporter ATP-binding protein Regulator
  LACPI_RS10200 (LACPI_2012) rcrP 2105770..2107542 (-) 1773 WP_047916210.1 ABC transporter ATP-binding protein Regulator
  LACPI_RS10205 (LACPI_2013) - 2107535..2108011 (-) 477 WP_050703047.1 MarR family winged helix-turn-helix transcriptional regulator -
  LACPI_RS10210 (LACPI_2014) - 2108173..2109105 (+) 933 WP_047916211.1 alpha/beta hydrolase -
  LACPI_RS10215 (LACPI_2015) lysS 2109385..2110872 (+) 1488 WP_047916212.1 lysine--tRNA ligase -
  LACPI_RS10220 (LACPI_2016) - 2110977..2111912 (-) 936 WP_050703048.1 D-2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 64841.19 Da        Isoelectric Point: 8.5209

>NTDB_id=1114000 LACPI_RS10200 WP_047916210.1 2105770..2107542(-) (rcrP) [Lactococcus piscium MKFS47]
MFKILKKLTGKELRYVGISLIFIITQVYLDLKLPDYMSKVTKLIQEKGTTVSQIFDQGKWMVLCALGSLAAAIVVGYFAA
RVAAGLSRTLRHDVYHQVSEYSMAEINQFSTASLITRSTNDITQVQMFVAMGLQLIIKAPITAVWAIFKIADKSWEWTTA
LGVAVLFILVAISIIVTLAMPRFKIIQKLTDKLNSVTRENLTGIHVVRAYNAEGYQTEKFERANADITSTNLFIQRVMAF
MMPMMSMVSSGLSVAVYLIGATIIKNAAIGTPGNSPRINLFSDMVVFTSYGMQVVMAFMMLTMIFIMMPRANVSAGRINE
VIDTDSSIKNGTKDGDTTTEVGTVEFKNVYFQYADASEHVIEGISFKANKGETVAFIGSTGSGKSTLINLIPRYYDVTAG
QVLVDGVNVKDYTENALHNKMGFIPQKPVMFNGTIRSNLAFGTNASGDLTDEALMSAVRLAQAEEFVTKNEKGLDAEISQ
GGLNLSGGQKQRLAIARALARRPEILVFDDSFSALDYKTDRVLRDTLNRETAETTKLIVAQRIGTIIDADQIIVLDKGKV
VGHGTHTELLASNPVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=1114000 LACPI_RS10200 WP_047916210.1 2105770..2107542(-) (rcrP) [Lactococcus piscium MKFS47]
ATGTTTAAAATACTGAAAAAGCTCACTGGAAAAGAGCTTCGCTATGTTGGCATTAGCCTTATTTTTATCATCACACAGGT
CTATTTGGACTTGAAATTACCTGATTATATGAGTAAGGTCACAAAATTAATCCAAGAAAAAGGCACGACTGTTTCTCAGA
TTTTTGATCAGGGGAAATGGATGGTGCTGTGCGCTTTAGGCTCGCTTGCAGCAGCAATCGTCGTCGGCTATTTTGCGGCT
CGTGTTGCAGCAGGTCTGTCACGAACGCTTCGTCACGATGTCTACCATCAGGTATCTGAGTACTCGATGGCTGAAATCAA
TCAGTTTTCAACAGCTAGTTTGATAACACGTTCGACAAATGATATCACACAAGTACAAATGTTTGTTGCCATGGGCTTAC
AGCTGATTATAAAAGCGCCAATTACAGCAGTCTGGGCTATTTTTAAAATTGCAGATAAGTCTTGGGAATGGACGACAGCG
CTAGGTGTTGCGGTGTTATTTATCTTGGTTGCCATCAGTATTATCGTTACCCTTGCCATGCCAAGATTTAAGATTATCCA
AAAGTTAACGGATAAATTGAACTCGGTTACCCGAGAAAATTTGACAGGGATTCATGTTGTACGCGCCTATAATGCAGAAG
GCTATCAAACAGAAAAATTCGAGCGAGCAAATGCGGATATCACGTCAACGAATCTATTTATTCAACGCGTCATGGCCTTC
ATGATGCCTATGATGTCGATGGTTTCATCAGGCCTTTCAGTTGCTGTTTATCTGATTGGTGCAACGATCATCAAAAATGC
AGCGATTGGTACACCAGGGAATTCACCACGGATAAATTTATTTTCTGATATGGTCGTCTTTACTTCTTATGGCATGCAAG
TCGTGATGGCCTTCATGATGCTGACGATGATTTTCATCATGATGCCACGTGCTAATGTATCTGCTGGCCGGATTAATGAG
GTGATCGATACAGACTCATCTATCAAAAATGGTACGAAAGATGGAGATACTACAACAGAAGTTGGGACAGTTGAATTTAA
AAATGTCTACTTCCAATATGCGGATGCTTCTGAACATGTGATTGAAGGCATATCATTTAAGGCAAATAAAGGGGAAACTG
TCGCCTTTATCGGCTCTACAGGGTCTGGTAAATCCACTTTAATTAATCTTATTCCGCGTTACTATGATGTCACAGCAGGT
CAAGTGTTGGTTGATGGTGTTAATGTTAAGGATTATACGGAAAATGCCCTACATAATAAAATGGGCTTTATCCCGCAAAA
ACCAGTCATGTTTAATGGGACGATTCGATCTAACTTGGCCTTTGGGACAAATGCAAGTGGTGACTTAACTGATGAGGCCC
TTATGTCAGCAGTTCGTCTTGCACAAGCAGAAGAATTTGTCACAAAAAATGAAAAAGGCTTGGATGCTGAAATTTCACAA
GGCGGGCTCAACCTTTCTGGTGGTCAAAAACAACGCCTTGCAATTGCGCGCGCGTTAGCACGTCGACCAGAGATTCTGGT
ATTTGATGATAGTTTCTCAGCGCTGGATTATAAGACTGACCGTGTTTTACGTGATACATTGAACCGCGAAACCGCAGAGA
CGACAAAATTAATTGTCGCACAGCGTATTGGGACGATTATTGATGCAGATCAAATTATTGTGTTGGACAAAGGGAAAGTA
GTTGGTCATGGGACACACACTGAACTTTTAGCAAGCAATCCAGTCTATCAAGAAATTGCTTATTCACAACTATCTAAGGA
GGAATTAGCCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(362-511)

ABC transporter transmembrane region (ABC_membrane)

(18-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

56.187

100

0.569

Multiple sequence alignment