Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LACPI_RS01690 Genome accession   NZ_LN774769
Coordinates   324193..324981 (+) Length   262 a.a.
NCBI ID   WP_047914787.1    Uniprot ID   A0A0D6DUR1
Organism   Lactococcus piscium MKFS47     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 319193..329981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LACPI_RS01660 (LACPI_0312) rpmH 320142..320276 (+) 135 WP_047914782.1 50S ribosomal protein L34 -
  LACPI_RS01665 (LACPI_0313) - 320417..321337 (+) 921 WP_047914783.1 aldo/keto reductase -
  LACPI_RS01670 (LACPI_0314) - 321474..321740 (+) 267 WP_047914784.1 IreB family regulatory phosphoprotein -
  LACPI_RS01675 (LACPI_0315) ruvX 321740..322162 (+) 423 WP_047914785.1 Holliday junction resolvase RuvX -
  LACPI_RS01680 (LACPI_0316) - 322186..322509 (+) 324 WP_047914786.1 DUF1292 domain-containing protein -
  LACPI_RS01685 (LACPI_0317) - 322667..324088 (+) 1422 WP_082095383.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  LACPI_RS01690 (LACPI_0318) codY 324193..324981 (+) 789 WP_047914787.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LACPI_RS01695 (LACPI_0319) aspS 325264..327027 (+) 1764 WP_047914788.1 aspartate--tRNA ligase -
  LACPI_RS01700 (LACPI_0320) gatC 327098..327391 (+) 294 WP_047914789.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  LACPI_RS01705 (LACPI_0321) gatA 327392..328834 (+) 1443 WP_047914790.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 28849.93 Da        Isoelectric Point: 4.6830

>NTDB_id=1113972 LACPI_RS01690 WP_047914787.1 324193..324981(+) (codY) [Lactococcus piscium MKFS47]
MATLLEKTRKITAILQEGLNNSSEELPYKGLSERLSAVIDCNSVVIDGHGDVLGYAMPYKTNNDRVEAMFDNRKLSTEYV
QVASRTYDTEANLSSDAMLSLYPQEVVKDYPNGKTTVAPIYGSGLRLGTFIIWRNEGEFDEEDLVLVEMATTVIGIQLSN
LQIEKMEESIRKSAAVNMAVSTLSYSEMKAVKAILEELGGEEGRLTASVIADKIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVVNTGIYEKLEGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=1113972 LACPI_RS01690 WP_047914787.1 324193..324981(+) (codY) [Lactococcus piscium MKFS47]
ATGGCTACTTTATTAGAAAAAACAAGAAAAATCACAGCGATTTTACAAGAAGGGTTAAATAATTCAAGTGAAGAATTACC
CTATAAAGGGTTATCAGAACGCCTATCAGCAGTGATTGACTGTAACTCTGTCGTTATTGATGGCCACGGGGATGTACTTG
GCTATGCAATGCCATATAAGACAAACAACGACCGTGTTGAGGCGATGTTTGATAATCGTAAACTGTCGACTGAATATGTA
CAAGTTGCATCACGTACTTATGATACTGAAGCAAACCTATCATCAGATGCGATGTTATCACTTTATCCACAAGAAGTCGT
AAAAGACTACCCAAATGGTAAAACAACAGTGGCACCGATTTATGGTAGTGGCTTACGACTAGGAACATTTATTATCTGGC
GCAACGAAGGCGAGTTTGATGAAGAAGATCTTGTCTTGGTAGAGATGGCAACAACGGTTATCGGTATCCAATTATCAAAT
CTACAAATTGAAAAAATGGAAGAAAGTATCCGTAAATCAGCAGCTGTTAACATGGCAGTCAGCACTTTATCTTATTCTGA
AATGAAAGCTGTTAAAGCGATCCTTGAAGAACTTGGTGGAGAAGAAGGCCGTTTGACAGCCTCAGTGATTGCGGATAAAA
TCGGTATCACACGTTCAGTTATCGTCAATGCATTACGTAAGCTTGAATCAGCCGGTATTATTGAATCTCGTTCTCTTGGT
ATGAAAGGCACTTATCTAAAAGTTGTCAATACTGGTATCTACGAGAAACTTGAAGGCCGTAACTTCTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D6DUR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

69.084

100

0.691
  codY Bacillus subtilis subsp. subtilis str. 168

45.49

97.328

0.443

Multiple sequence alignment