Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   VV28_RS08520 Genome accession   NZ_LN680001
Coordinates   1690095..1690874 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain BS34A     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1685095..1695874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV28_RS08500 (BS34A_17810) trmFO 1685789..1687096 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  VV28_RS08505 (BS34A_17820) xerC 1687164..1688078 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  VV28_RS08510 (BS34A_17830) clpQ 1688091..1688636 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  VV28_RS08515 (BS34A_17840) hslU 1688682..1690055 (+) 1374 WP_052589141.1 HslU--HslV peptidase ATPase subunit -
  VV28_RS08520 (BS34A_17850) codY 1690095..1690874 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  VV28_RS08525 (BS34A_17860) flgB 1691254..1691643 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  VV28_RS08530 (BS34A_17870) flgC 1691643..1692095 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  VV28_RS08535 (BS34A_17880) fliE 1692106..1692426 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  VV28_RS08540 (BS34A_17890) fliF 1692472..1694082 (+) 1611 WP_010886506.1 flagellar basal-body MS-ring/collar protein FliF -
  VV28_RS08545 (BS34A_17900) fliG 1694095..1695111 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  VV28_RS08550 (BS34A_17910) fliH 1695104..1695856 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=1113863 VV28_RS08520 WP_003220850.1 1690095..1690874(+) (codY) [Bacillus subtilis strain BS34A]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1113863 VV28_RS08520 WP_003220850.1 1690095..1690874(+) (codY) [Bacillus subtilis strain BS34A]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment