Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   SXYL_RS06120 Genome accession   NZ_LN554884
Coordinates   1290544..1292931 (+) Length   795 a.a.
NCBI ID   WP_038678681.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain C2a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1285544..1297931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SXYL_RS06100 (SXYL_01237) sal 1285789..1287420 (+) 1632 WP_080892131.1 Sal family ABC-F type ribosomal protection protein -
  SXYL_RS06105 (SXYL_01238) - 1287481..1288626 (+) 1146 WP_029377126.1 cysteine desulfurase family protein -
  SXYL_RS06110 (SXYL_01239) mnmA 1288627..1289739 (+) 1113 WP_047172280.1 tRNA 2-thiouridine(34) synthase MnmA -
  SXYL_RS06115 (SXYL_01240) - 1289872..1290540 (+) 669 WP_047172281.1 tetratricopeptide repeat protein -
  SXYL_RS06120 (SXYL_01241) recD2 1290544..1292931 (+) 2388 WP_038678681.1 ATP-dependent RecD-like DNA helicase Machinery gene
  SXYL_RS06125 (SXYL_01242) alaS 1293280..1295910 (+) 2631 WP_047172282.1 alanine--tRNA ligase -
  SXYL_RS06130 (SXYL_01243) - 1295979..1296239 (+) 261 WP_029377131.1 IreB family regulatory phosphoprotein -
  SXYL_RS06135 (SXYL_01244) ruvX 1296243..1296671 (+) 429 WP_047172283.1 Holliday junction resolvase RuvX -
  SXYL_RS06140 (SXYL_01245) - 1296688..1297026 (+) 339 WP_047172284.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 795 a.a.        Molecular weight: 89573.10 Da        Isoelectric Point: 4.5117

>NTDB_id=1113558 SXYL_RS06120 WP_038678681.1 1290544..1292931(+) (recD2) [Staphylococcus xylosus strain C2a]
MENPTLFNNSMIKGTVDAILFQNKENFYTVLKVDTIESNETFDSMPTIVGFFPDIAEGDVYTFKGQVVTHAKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQSIVNKLGENAISDILNDPTILEKVPSLPKKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQAYLGETLNVVEKKPYQLVYDVKGIGFNKADTLARNVGIQFNDAERLKAGLLYVLEEECIKQG
HTYLPTNNVLEMTQDMLSQPPGELIETQQLEQVLQDLVNDTKLIQQENEVAIPSLYYSELKSVQNLYRNFSYTNKLKEIE
QSDLLLEIGEIEERNKVTYADSQREALQTAINSKIMLLTGGPGTGKTTVIKGIVELYAELHGLSLDYDDYQNDDYPVVLG
APTGRASKRLSESTGLEAMTIHRLIGWNQDTQPEDILDNEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHRMKLGETIDITQRFHDRNFINCTTEQIPSVVEKVVSSAV
NKGYDMSDIQVLAPMYKGSAGIKKLNTVLQDILNPKEQDTREIEFGDIVFRKGDKVLQLVNRPSDNIFNGDIGVIVGIFW
AKENALNKDVLVVDFEGNEITFVRQDLMELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPQAFDIGLKTHGQVRMTQLCAFLKAYFNNEEETETADVSKSFDSDIILSEENIFKINPMINMGEFSPYDFVED

Nucleotide


Download         Length: 2388 bp        

>NTDB_id=1113558 SXYL_RS06120 WP_038678681.1 1290544..1292931(+) (recD2) [Staphylococcus xylosus strain C2a]
ATGGAAAACCCTACACTATTTAACAATTCAATGATTAAAGGGACCGTTGATGCGATTTTATTTCAAAACAAAGAGAATTT
TTATACGGTTTTAAAAGTTGATACGATTGAATCCAATGAGACATTTGATTCAATGCCTACAATTGTAGGGTTTTTCCCAG
ATATTGCAGAAGGTGACGTCTATACATTTAAAGGCCAAGTAGTTACACATGCAAAATATGGCAAACAATTAAAGGCTGAA
ACATTTGAAAAAGAGTTACCACAAACGAAAGAAGCAATTATAAGTTATTTATCTAGTGATCTTTTTAAAGGAATAGGTAA
AAAAACAGCTCAAAGTATTGTAAATAAATTAGGTGAAAATGCAATTAGCGACATATTAAATGATCCAACTATATTAGAAA
AAGTACCTAGTTTACCTAAAAAGAAACAAAAACAAATTGCTGAACAAATCGCAAGTAATCAAGAAACGGAACAAATAATC
ATTCGCCTCCATGATCTAGGTTTTGGGCCAAAGTTAGCAATGGCTATATACCAAGCATATTTAGGAGAAACACTTAACGT
AGTTGAAAAGAAACCTTATCAACTTGTATATGATGTCAAAGGCATCGGTTTTAATAAGGCAGACACATTAGCGCGTAATG
TCGGCATTCAATTTAACGATGCAGAACGTCTTAAAGCAGGGTTACTTTATGTGTTAGAAGAAGAATGTATAAAACAAGGT
CATACGTATTTACCTACGAATAATGTACTAGAGATGACTCAAGATATGCTATCACAACCACCAGGTGAACTAATAGAAAC
ACAGCAGCTTGAACAAGTTTTACAAGATTTAGTTAATGACACTAAATTAATTCAACAAGAAAATGAAGTTGCGATTCCAA
GTCTATACTATTCAGAATTGAAAAGCGTTCAAAATTTATACCGTAATTTTTCTTATACAAATAAACTAAAAGAAATTGAG
CAATCTGATTTGCTGCTTGAAATAGGAGAAATTGAGGAACGCAATAAAGTGACATATGCAGATTCTCAAAGAGAAGCCTT
GCAAACAGCGATTAACTCTAAAATAATGTTACTGACTGGTGGCCCAGGTACAGGAAAAACGACTGTCATTAAAGGAATTG
TTGAACTTTATGCAGAGTTGCATGGTCTATCATTAGATTATGACGATTATCAAAATGATGATTATCCAGTAGTTCTAGGT
GCGCCAACTGGACGTGCATCGAAACGTTTGTCAGAGTCAACTGGTTTAGAAGCTATGACGATACATCGCTTAATAGGTTG
GAATCAAGATACACAACCAGAAGATATTTTAGATAATGAAATTTCTGCAAAACTTATTATTATTGATGAAATGTCTATGG
TTGATACATGGTTATTCCATCAATTTTTGAGTGCTGTACCTATTGATGCACAAGTTATACTAGTCGGTGATGAAGATCAG
CTGCCATCTGTTGGACCAGGCCAAGTATTTAAAGATTTAATTGATTCAAAAGTAATTCCTCGTGTAAATTTAACTGAAGT
TTACCGACAACAAGATGGTTCAAGTATTATAGAATTAGCGCATAGGATGAAACTAGGAGAAACTATTGATATTACACAGA
GATTTCATGACCGTAATTTTATAAACTGTACAACAGAACAGATACCTTCAGTTGTTGAAAAAGTGGTGTCAAGTGCAGTG
AATAAAGGTTATGATATGAGTGATATTCAAGTATTAGCTCCGATGTATAAAGGGTCTGCAGGTATTAAGAAACTAAATAC
AGTATTGCAAGATATCTTGAATCCCAAAGAACAAGATACTAGAGAAATTGAGTTCGGTGATATTGTCTTTAGAAAAGGTG
ATAAGGTATTACAACTAGTTAACCGACCAAGCGATAATATATTTAATGGTGATATCGGGGTCATTGTAGGCATCTTCTGG
GCTAAAGAAAATGCATTAAACAAAGATGTATTGGTAGTTGATTTTGAAGGTAATGAGATTACATTTGTTCGTCAAGACTT
AATGGAGTTGACGCATGCCTATTGTACTTCAATCCATAAGTCACAAGGATCAGAATTTCCGATCGTGATTATGCCAATGG
TTAAACAGTACTTTAGAATGCTTCAAAAACCTATATTATATACAGGTTTAACACGTGCTAAACAGTCACTTGTGTTCTTA
GGAGATCCACAAGCATTTGATATTGGTCTAAAGACTCACGGCCAAGTGAGAATGACACAATTGTGTGCTTTTCTTAAAGC
GTATTTTAATAATGAGGAAGAAACTGAAACTGCTGATGTCAGTAAATCCTTTGATTCAGATATTATATTGTCTGAAGAAA
ATATATTTAAAATAAATCCAATGATTAATATGGGTGAATTTTCCCCGTATGACTTCGTTGAAGATTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

AAA domain (AAA_30)

(339-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.126

99.874

0.501

Multiple sequence alignment