Detailed information NTG1112794

Bioinformatically predicted

Overview

• Name: comF
• Type: Machinery gene
• Locus tag: J5312_RS05460
• Genome accession: NZ_JAGFUR010000001
• Coordinates: 1095273..1095926 (-)
• Length: 217 a.a.
• NCBI ID: WP_004918078.1
• Uniprot ID: A0AAP6LJM8
• Organism: Riemerella anatipestifer strain 20190502E1-H1
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1090273..1100926

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5312_RS05440 (J5312_05440)	-	1091092..1092174 (-)	1083	WP_064971218.1	serine hydrolase	-
J5312_RS05445 (J5312_05445)	-	1092286..1093941 (-)	1656	WP_064971217.1	ribonucleoside-diphosphate reductase subunit alpha	-
J5312_RS05450 (J5312_05450)	-	1093989..1094963 (-)	975	WP_064971216.1	ribonucleotide-diphosphate reductase subunit beta	-
J5312_RS05455 (J5312_05455)	-	1095045..1095185 (+)	141	WP_015345427.1	hypothetical protein	-
J5312_RS05460 (J5312_05460)	comF	1095273..1095926 (-)	654	WP_004918078.1	ComF family protein	Machinery gene
J5312_RS05470 (J5312_05470)	-	1096149..1096700 (-)	552	WP_064971215.1	hypothetical protein	-
J5312_RS05475 (J5312_05475)	-	1096755..1097405 (-)	651	WP_154212730.1	HD domain-containing protein	-
J5312_RS05480 (J5312_05480)	-	1097427..1098305 (-)	879	WP_127919822.1	IS982-like element ISRa1 family transposase	-
J5312_RS05485 (J5312_05485)	gdhA	1098524..1099882 (-)	1359	WP_049334426.1	NADP-specific glutamate dehydrogenase	-

Sequence

Protein

• Length: 217 a.a.
• Molecular weight: 25339.46 Da
• Isoelectric Point: 9.4150

>NTDB_id=1112794 J5312_RS05460 WP_004918078.1 1095273..1095926(-) (comF) [Riemerella anatipestifer strain 20190502E1-H1]
MFLDFFLPNRCLKCNLIISSDEIVCWACKSHINFTYNDFGGKGDFYQKVVLKFPVNKAFSLMKYEKKELSQDIIHALKYH
SMERVGKVLAHWVSENMDLSHQGIDILTNIPLHPKKQRERGYNQLHLFTKTLSQLQRIPYSHYLLKRNFYSKPQALKQKL
DREKMQNIFSVDEKIEGKHILLIDDVYTTGNTMSKAVWELLKGNGNQVSVLVLAIDE

Nucleotide

• Length: 654 bp

>NTDB_id=1112794 J5312_RS05460 WP_004918078.1 1095273..1095926(-) (comF) [Riemerella anatipestifer strain 20190502E1-H1]
ATGTTTTTAGATTTTTTTCTGCCCAATAGATGCCTAAAGTGTAATCTCATTATTTCCTCTGATGAAATCGTTTGCTGGGC
GTGTAAGTCTCATATCAATTTTACCTACAATGATTTTGGAGGAAAAGGGGATTTTTATCAAAAAGTTGTTCTTAAATTTC
CAGTAAATAAGGCTTTTAGTTTGATGAAGTACGAGAAAAAAGAACTTTCTCAAGATATTATACACGCCTTAAAGTACCAT
TCTATGGAGCGTGTGGGTAAGGTGTTAGCTCATTGGGTTTCTGAAAATATGGATTTATCTCATCAAGGGATAGATATATT
AACTAATATTCCACTTCATCCTAAAAAACAAAGAGAGAGAGGGTATAATCAGTTGCATTTATTTACAAAAACATTATCTC
AGTTGCAGAGGATACCTTATTCTCATTATCTTCTTAAAAGAAATTTCTATTCTAAGCCTCAAGCCTTAAAGCAAAAATTG
GATAGAGAAAAGATGCAAAATATATTTTCTGTAGATGAGAAAATAGAAGGTAAACACATCTTACTTATAGACGATGTATA
TACCACAGGAAATACAATGAGTAAAGCGGTTTGGGAGCTTTTAAAAGGAAATGGGAATCAGGTGAGTGTTTTGGTTTTGG
CAATAGATGAATAA

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (163-212)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comF	Riemerella anatipestifer ATCC 11845 = DSM 15868	100	100	1