Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KHN94_RS00665 Genome accession   NZ_HG992758
Coordinates   135928..136650 (-) Length   240 a.a.
NCBI ID   WP_182009846.1    Uniprot ID   -
Organism   Vibrio sp. B1FLJ16 isolate B1REV17     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 130928..141650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHN94_RS00640 (ACOMICROBIO_LOCUS79) - 132125..132616 (+) 492 WP_182028849.1 type II secretion system protein M -
  KHN94_RS00645 (ACOMICROBIO_EPCKBFOG_00131) - 132618..133379 (+) 762 WP_182028847.1 type II secretion system protein N -
  KHN94_RS00650 (ACOMICROBIO_LOCUS80) cysQ 133672..134499 (-) 828 WP_182028845.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  KHN94_RS00655 (ACOMICROBIO_LOCUS81) nudE 134535..135095 (-) 561 WP_182028843.1 ADP compounds hydrolase NudE -
  KHN94_RS00660 (ACOMICROBIO_LOCUS82) nfuA 135259..135843 (-) 585 WP_182009847.1 Fe-S biogenesis protein NfuA -
  KHN94_RS00665 (ACOMICROBIO_EPCKBFOG_00135) comF 135928..136650 (-) 723 WP_182009846.1 ComF family protein Machinery gene
  KHN94_RS00670 (ACOMICROBIO_EPCKBFOG_00136) bioH 136735..137502 (+) 768 WP_182028841.1 pimeloyl-ACP methyl ester esterase BioH -
  KHN94_RS00675 (ACOMICROBIO_EPCKBFOG_00137) - 137620..138084 (+) 465 WP_182028839.1 ATP-dependent Lon protease -
  KHN94_RS00680 (ACOMICROBIO_LOCUS83) - 138164..140491 (-) 2328 WP_182028837.1 Tex family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27203.37 Da        Isoelectric Point: 8.2488

>NTDB_id=1112508 KHN94_RS00665 WP_182009846.1 135928..136650(-) (comF) [Vibrio sp. B1FLJ16 isolate B1REV17]
MLSHHWQNIMHHVLGSQCGLCRLPLDNTNPPNALRWCGQCFQSLAPIKRCPVCGLTMKDEEENHIWCGQCLTEPPPWQRL
ITLGDYDFPLAREVQRFKDNGDLWHVDALTQLLAERITTPAPLITTVPLHWKRYISRGFNQSDILARRLAAHLQSDADCR
IFRRVAHAGSQRGHNKSHREHNLKGAFVLNKKPLSKHVAIVDDVVTTGSTVRQLCQLLLEVGVESIDIYCICRTPAPTSV

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1112508 KHN94_RS00665 WP_182009846.1 135928..136650(-) (comF) [Vibrio sp. B1FLJ16 isolate B1REV17]
ATGTTATCTCATCACTGGCAAAACATCATGCATCATGTGCTCGGCAGTCAGTGTGGTTTGTGCAGGCTTCCGCTGGACAA
CACAAACCCGCCTAATGCTCTTCGTTGGTGCGGCCAATGCTTTCAGTCACTTGCCCCGATAAAAAGATGCCCTGTCTGCG
GTTTAACAATGAAGGATGAAGAGGAAAATCATATATGGTGTGGTCAGTGTTTAACCGAGCCACCGCCATGGCAGCGACTC
ATCACACTCGGCGATTACGACTTTCCGCTTGCGCGCGAAGTACAACGCTTTAAGGATAATGGCGATCTCTGGCACGTCGA
CGCACTGACTCAGCTGCTAGCTGAACGCATTACTACGCCCGCCCCGCTCATCACCACTGTACCTTTACACTGGAAGCGCT
ATATATCTCGCGGATTTAACCAAAGTGACATACTCGCCAGACGCTTAGCTGCCCATCTTCAAAGCGATGCAGACTGCCGG
ATATTTCGTCGGGTCGCGCACGCAGGATCACAACGAGGCCACAATAAATCTCACCGGGAACACAACCTGAAAGGTGCGTT
TGTCCTCAATAAAAAACCATTGAGTAAACATGTAGCGATTGTTGACGATGTGGTTACCACTGGCAGTACTGTCCGACAAT
TATGCCAATTACTACTTGAAGTTGGCGTAGAAAGCATTGATATTTACTGCATCTGCAGAACACCTGCTCCTACTTCGGTC
TAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(180-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

65.145

100

0.654
  comF Vibrio cholerae strain A1552

49.789

98.75

0.492

Multiple sequence alignment