Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KJB05_RS17350 Genome accession   NZ_HG992742
Coordinates   3824193..3824918 (+) Length   241 a.a.
NCBI ID   WP_208445297.1    Uniprot ID   A0A812GXG3
Organism   Vibrio sp. B1ASS3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3819193..3829918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJB05_RS17335 (ACOMICROBIO_LOCUS2370) - 3820318..3822639 (+) 2322 WP_017189965.1 Tex family protein -
  KJB05_RS17340 (ACOMICROBIO_NCLOACGD_03509) - 3822744..3823208 (-) 465 WP_005430182.1 hypothetical protein -
  KJB05_RS17345 (ACOMICROBIO_NCLOACGD_03510) bioH 3823344..3824108 (-) 765 WP_039985659.1 pimeloyl-ACP methyl ester esterase BioH -
  KJB05_RS17350 (ACOMICROBIO_NCLOACGD_03511) comF 3824193..3824918 (+) 726 WP_208445297.1 phosphoribosyltransferase family protein Machinery gene
  KJB05_RS17355 (ACOMICROBIO_LOCUS2371) nfuA 3825016..3825600 (+) 585 WP_005434470.1 Fe-S biogenesis protein NfuA -
  KJB05_RS17360 (ACOMICROBIO_LOCUS2372) nudE 3825775..3826338 (+) 564 WP_005434477.1 ADP compounds hydrolase NudE -
  KJB05_RS17365 (ACOMICROBIO_LOCUS2373) cysQ 3826383..3827210 (+) 828 WP_005434478.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  KJB05_RS17370 (ACOMICROBIO_NCLOACGD_03516) - 3827499..3828260 (-) 762 WP_208445296.1 type II secretion system protein N -
  KJB05_RS17375 (ACOMICROBIO_LOCUS2374) - 3828262..3828753 (-) 492 WP_009707965.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27534.69 Da        Isoelectric Point: 8.3751

>NTDB_id=1112407 KJB05_RS17350 WP_208445297.1 3824193..3824918(+) (comF) [Vibrio sp. B1ASS3]
MLSHQWQNIMHRVLGSQCGLCRFPISAKQKPNPLRWCDRCFEHLAPIKRCTRCGLKMTEEESQTSTECGECLKEPPPWQR
LYTLGDYGFPLSNQVQRFKDHGEAWHVGALTQLLAEQIEHPAPVITCVPIHWQRYLKRGFNQSHILAKHLAHHLDVRYED
KVFKRVKSVESQRGNKKASREQNLKGAFTLQGEVNFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1112407 KJB05_RS17350 WP_208445297.1 3824193..3824918(+) (comF) [Vibrio sp. B1ASS3]
ATGTTATCTCATCAATGGCAAAACATCATGCACCGCGTACTTGGCAGCCAATGTGGTTTGTGTCGATTTCCAATCTCTGC
TAAACAGAAACCAAACCCATTGCGTTGGTGCGACCGTTGTTTTGAACACCTTGCGCCCATCAAACGCTGCACTCGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACAAACCTCCACGGAATGCGGTGAGTGCCTGAAAGAGCCACCACCTTGGCAACGT
TTGTATACGTTGGGAGATTATGGTTTCCCCCTGTCTAACCAAGTGCAACGCTTTAAAGATCATGGTGAGGCATGGCATGT
CGGCGCACTCACTCAATTGCTGGCCGAACAAATTGAACACCCAGCGCCAGTGATTACTTGTGTACCAATACATTGGCAAC
GTTATTTAAAACGAGGATTTAACCAAAGCCATATTCTAGCCAAACACCTCGCCCACCATTTGGATGTGCGATATGAAGAT
AAGGTATTTAAACGCGTTAAAAGCGTCGAATCGCAACGAGGAAACAAAAAAGCCAGTCGTGAGCAGAATTTAAAAGGGGC
ATTTACCCTACAAGGTGAGGTGAACTTTTCCCACGTAGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCCCCAGGCTCA
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A812GXG3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

87.137

100

0.871
  comF Vibrio cholerae strain A1552

47.479

98.755

0.469

Multiple sequence alignment