Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CM240_RS12895 Genome accession   NZ_HG917868
Coordinates   2829876..2831717 (-) Length   613 a.a.
NCBI ID   WP_044039523.1    Uniprot ID   W6S1H8
Organism   Clostridium bornimense strain M2/40     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2824876..2836717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CM240_RS12875 (CM240_2606) - 2825802..2826593 (-) 792 WP_044039519.1 hypothetical protein -
  CM240_RS12880 (CM240_2607) - 2826790..2827605 (-) 816 WP_044039520.1 hypothetical protein -
  CM240_RS12885 (CM240_2608) - 2827745..2829097 (-) 1353 WP_044039521.1 PFL family protein -
  CM240_RS12890 (CM240_2609) - 2829115..2829384 (-) 270 WP_044039522.1 ACT domain-containing protein -
  CM240_RS12895 (CM240_2610) rcrQ 2829876..2831717 (-) 1842 WP_044039523.1 ABC transporter ATP-binding protein Regulator
  CM240_RS12900 (CM240_2611) - 2831710..2833947 (-) 2238 WP_044039524.1 ABC transporter ATP-binding protein -
  CM240_RS12905 (CM240_2612) - 2834129..2834572 (+) 444 WP_044039525.1 MarR family transcriptional regulator -
  CM240_RS12910 (CM240_2613) - 2834661..2835581 (-) 921 WP_051483835.1 alpha/beta hydrolase -
  CM240_RS12915 - 2835823..2836086 (+) 264 WP_242838481.1 hypothetical protein -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 68140.96 Da        Isoelectric Point: 5.7036

>NTDB_id=1112156 CM240_RS12895 WP_044039523.1 2829876..2831717(-) (rcrQ) [Clostridium bornimense strain M2/40]
MSKKKHGGPMGGGPMVVTEKAKDFKGTMKKLMEYLKPYRIAMILVFILAIGSTAFSIVGPKLLGKATTEIFNGLMSKVSS
SGNGSIDFGYIGKIAIGLVALYIVSTILSFIQGFVMSGIAQKVSYNLRKEISKKINRMPLKYFDKTTHGEVLSRITNDVD
TVNTTLNQSLSQIITSVTMLIGVIVMMLSISWEMTLGSVLILPIAMGLIMLVVKKSQKYFMDQQEYLGHVNGNVEETFSG
HNIMKAFNREEETIEEFNKLNETLYKSAWKSQFLSGMMMPIMTFIGNLGYVLVTILGGWLAVLGKITVGDIVAFTQYIRT
FMQPISQAGQIANVLQSTAAAAERVFEFLDEEEEVDDVTEGVNPKDVEGAVEFKDVHFGYNEDKIIINDFSAKIKPGQRV
AIVGPTGAGKTTIVKLLMRFYELNGGSIEIDGHNIKDFTRDNLRELFGMVLQDTWLYNGSIKENIRYGRLDATDEEIIEA
AKLAHVDHFVRALPHGYDMELNEEASNISQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMDNLMKGRTSF
VIAHRLSTIRDADLILVMKDGDIIEQGNHEELLKANGFYADLYNSQFEKEEVS

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=1112156 CM240_RS12895 WP_044039523.1 2829876..2831717(-) (rcrQ) [Clostridium bornimense strain M2/40]
ATGAGTAAGAAAAAACATGGCGGCCCTATGGGTGGAGGTCCAATGGTAGTTACAGAAAAAGCTAAAGACTTTAAAGGTAC
AATGAAAAAGCTTATGGAGTATTTAAAACCCTATAGAATTGCTATGATTTTAGTTTTTATATTAGCAATAGGGAGTACTG
CTTTTTCAATAGTCGGACCGAAGTTACTAGGTAAGGCTACAACGGAGATATTTAATGGATTAATGAGCAAGGTTTCTAGT
TCAGGTAATGGTTCTATTGATTTTGGATATATAGGGAAGATTGCCATAGGATTAGTTGCATTATATATAGTTAGTACAAT
ATTATCGTTTATACAAGGCTTTGTTATGTCAGGAATAGCTCAAAAAGTATCATATAATTTGAGAAAAGAGATTTCTAAAA
AGATAAATCGTATGCCTTTAAAATATTTTGATAAAACTACTCATGGAGAAGTTCTATCAAGAATAACTAATGATGTAGAT
ACTGTTAATACAACATTAAATCAAAGTTTATCTCAAATAATAACATCTGTAACTATGCTTATTGGTGTAATAGTTATGAT
GTTATCTATAAGCTGGGAAATGACTTTAGGATCAGTATTGATATTACCAATTGCTATGGGATTAATAATGTTAGTAGTAA
AGAAATCTCAAAAGTATTTTATGGATCAACAAGAGTATCTTGGACATGTAAATGGTAACGTAGAGGAAACTTTTAGTGGA
CACAATATAATGAAGGCATTTAATAGAGAAGAAGAAACAATAGAAGAGTTTAATAAATTAAATGAAACATTATATAAGTC
AGCGTGGAAGTCACAATTTTTATCAGGAATGATGATGCCTATAATGACTTTTATAGGTAACTTAGGATATGTATTAGTAA
CAATACTTGGTGGATGGCTTGCGGTATTAGGAAAAATAACAGTTGGAGATATTGTAGCATTTACACAATATATACGTACA
TTTATGCAACCAATATCACAAGCAGGTCAAATAGCAAATGTTCTTCAATCTACGGCGGCTGCTGCTGAAAGAGTATTTGA
GTTCTTAGATGAGGAAGAAGAAGTTGATGATGTTACAGAAGGTGTAAATCCTAAAGATGTTGAAGGCGCTGTTGAATTTA
AAGATGTTCATTTTGGATATAATGAAGATAAAATAATCATAAATGATTTCTCAGCTAAGATTAAGCCAGGACAAAGAGTT
GCAATAGTTGGACCTACAGGAGCAGGTAAAACTACTATAGTTAAACTTCTTATGAGATTTTATGAACTTAATGGTGGTTC
TATAGAGATAGATGGTCATAATATTAAAGACTTTACTCGTGATAATTTAAGAGAATTATTTGGTATGGTTCTTCAAGATA
CATGGTTATATAATGGAAGTATTAAAGAAAATATAAGATATGGTAGATTAGATGCTACTGATGAAGAAATAATAGAAGCT
GCTAAATTAGCACATGTAGATCATTTTGTACGTGCATTGCCGCATGGATATGATATGGAACTAAATGAAGAAGCAAGTAA
TATATCTCAAGGTCAAAAGCAATTACTTACTATTGCCAGGGCAATACTTGCTGATCCTAAGATATTAATTTTAGATGAAG
CAACTAGTTCAGTAGATACTCGTACAGAAGTTCTTATTCAAAAAGCTATGGATAATTTAATGAAAGGTAGAACAAGTTTT
GTTATCGCTCATAGATTATCTACTATTAGAGATGCAGACTTAATTTTAGTAATGAAAGATGGAGATATAATTGAGCAAGG
AAATCATGAAGAATTATTAAAGGCTAATGGTTTCTATGCAGATCTTTATAATAGTCAATTTGAAAAAGAAGAAGTGTCAT
AA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(388-536)

ABC transporter transmembrane region (ABC_membrane)

(42-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W6S1H8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.701

95.922

0.496

Multiple sequence alignment