Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CM240_RS08655 Genome accession   NZ_HG917868
Coordinates   1917206..1918972 (-) Length   588 a.a.
NCBI ID   WP_044039848.1    Uniprot ID   -
Organism   Clostridium bornimense strain M2/40     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1912206..1923972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CM240_RS08645 (CM240_1749) ade 1913117..1914847 (-) 1731 WP_044038399.1 adenine deaminase -
  CM240_RS08650 (CM240_1750) - 1914865..1916649 (-) 1785 WP_173400232.1 adenine deaminase C-terminal domain-containing protein -
  CM240_RS08655 (CM240_1751) rcrQ 1917206..1918972 (-) 1767 WP_044039848.1 ABC transporter ATP-binding protein Regulator
  CM240_RS08660 (CM240_1752) rcrP 1919026..1920789 (-) 1764 WP_044038402.1 ABC transporter ATP-binding protein Regulator
  CM240_RS08665 (CM240_1753) - 1920960..1921634 (+) 675 WP_044038404.1 response regulator transcription factor -
  CM240_RS08670 (CM240_1754) - 1921627..1922676 (+) 1050 WP_044038406.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 64766.27 Da        Isoelectric Point: 6.4086

>NTDB_id=1112142 CM240_RS08655 WP_044039848.1 1917206..1918972(-) (rcrQ) [Clostridium bornimense strain M2/40]
MAAVGERPKEFRKTWGKLIGYSKQYWGVIILAFILAILGAVITVVSPDKLSEITDIITEGLITGIDMESITNIGGILAAL
YLLSFVFSYLQGFIMATVTQKITKSLRSDISNKINKLPLRYFDRTTIGDVLSRVSNDVDTISQSLNQSVGTLVSGIAVFL
GSLIMMFITDVTLSITAIVSTIIGFVLMMIIIGKSQKYFIELQENLGAVNGHIEEVYSGQTIIKVYNAEEKVSREFSNIN
GKLRTSVWKSQFLSGIMMPLMMFIGNFSYVAVCIVGGVLAFDGKISFGVIVAFMVYVRLFTQPLSQFAQAATSLQSTAAA
SERVFDFLSEVEMDDESHKVKKLTTVKGNVEFNHVKFGYNKDRVIIKDFSVKVKAGQKVAIVGPTGAGKTTIVNLLMRFY
DVNSGEIKIEGVPIQELTRENVHDLFCMVLQDTWLFEGTIKENIVYSKNNVSDATVVAACKAVGIDHFIRTLPQGYDTVL
NDNTNLSAGQKQLITIARAMVEDAPLLILDEATSSVDTRTETLIQSAMDKLMVGRTSFVIAHRLSTIKNADIILVMKDGD
IIESGNHDKLLKDGGFYADLYNSQFEKA

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=1112142 CM240_RS08655 WP_044039848.1 1917206..1918972(-) (rcrQ) [Clostridium bornimense strain M2/40]
ATGGCTGCCGTAGGAGAAAGACCTAAAGAATTTAGAAAGACTTGGGGGAAACTTATAGGATATAGTAAGCAGTATTGGGG
TGTAATTATATTAGCTTTTATATTAGCTATTTTAGGTGCGGTAATTACTGTTGTCAGTCCAGATAAATTAAGTGAGATAA
CAGATATAATCACTGAAGGATTAATAACAGGAATTGATATGGAGAGCATAACTAATATAGGTGGTATATTAGCAGCGTTA
TATTTATTAAGTTTTGTATTTAGTTATTTACAAGGTTTTATAATGGCAACAGTGACACAAAAGATTACTAAAAGTCTTAG
AAGTGATATCTCAAATAAAATTAATAAGTTACCTTTACGATATTTTGATAGAACTACAATAGGAGATGTGTTAAGCCGTG
TTTCAAATGATGTAGATACGATAAGTCAATCTTTAAATCAAAGTGTAGGAACTCTAGTCAGTGGTATAGCAGTATTTTTA
GGTTCATTAATAATGATGTTTATAACAGATGTAACTTTAAGTATAACAGCTATAGTTTCTACTATTATTGGATTTGTACT
TATGATGATTATTATAGGGAAATCTCAAAAATATTTTATAGAGTTACAAGAAAATCTTGGTGCTGTCAATGGTCATATTG
AAGAGGTTTATTCAGGGCAAACTATAATAAAAGTATATAATGCAGAAGAGAAAGTAAGCAGGGAATTTTCTAATATAAAT
GGTAAGTTAAGAACTAGTGTATGGAAATCTCAATTTTTATCAGGGATAATGATGCCTCTTATGATGTTCATAGGGAACTT
TTCATATGTGGCAGTTTGTATAGTAGGCGGGGTATTAGCTTTTGATGGGAAAATATCTTTTGGAGTAATTGTAGCGTTTA
TGGTTTATGTTAGATTATTTACACAGCCACTATCTCAATTTGCTCAAGCAGCCACTAGTTTACAATCAACTGCAGCAGCT
AGTGAGCGTGTATTTGACTTTTTATCAGAAGTAGAAATGGATGATGAAAGTCATAAAGTTAAAAAGCTAACTACCGTTAA
GGGGAATGTAGAATTTAATCATGTGAAATTTGGATATAATAAAGATAGAGTTATAATTAAAGATTTTTCTGTAAAAGTAA
AGGCTGGTCAGAAGGTAGCTATAGTAGGACCTACCGGGGCAGGGAAAACAACAATTGTAAATTTATTAATGAGGTTTTAT
GATGTAAATAGTGGAGAAATAAAAATAGAAGGGGTACCGATACAAGAATTAACCAGAGAAAATGTCCATGACTTATTCTG
CATGGTGCTTCAAGATACATGGTTATTTGAAGGAACAATTAAAGAAAATATTGTTTATAGTAAAAATAATGTTTCAGATG
CCACTGTAGTGGCTGCATGTAAAGCTGTTGGTATAGATCATTTTATACGTACATTACCACAGGGATATGATACTGTATTA
AATGATAATACCAATCTTTCAGCGGGGCAAAAGCAATTAATTACTATTGCAAGGGCAATGGTAGAAGATGCTCCGTTATT
AATATTAGATGAAGCAACAAGTTCAGTAGATACTCGTACTGAAACTTTAATACAAAGTGCTATGGATAAATTAATGGTGG
GAAGAACATCATTTGTTATTGCTCATAGACTTTCTACAATTAAAAATGCTGACATCATTCTAGTAATGAAGGATGGAGAT
ATAATAGAAAGTGGAAATCATGATAAGCTTCTTAAAGATGGTGGTTTCTATGCAGATTTATATAATAGTCAGTTTGAAAA
GGCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(367-514)

ABC transporter transmembrane region (ABC_membrane)

(29-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

59.051

96.769

0.571

Multiple sequence alignment