Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACOB85_RS21300 Genome accession   NZ_CP184834
Coordinates   2942291..2943016 (+) Length   241 a.a.
NCBI ID   WP_033905914.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain HoVa25     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2937291..2948016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOB85_RS21285 (ACOB85_21285) - 2938424..2940745 (+) 2322 WP_248487231.1 Tex family protein -
  ACOB85_RS21290 (ACOB85_21290) - 2940850..2941314 (-) 465 WP_005379316.1 hypothetical protein -
  ACOB85_RS21295 (ACOB85_21295) bioH 2941439..2942206 (-) 768 WP_285385035.1 pimeloyl-ACP methyl ester esterase BioH -
  ACOB85_RS21300 (ACOB85_21300) comF 2942291..2943016 (+) 726 WP_033905914.1 amidophosphoribosyltransferase Machinery gene
  ACOB85_RS21305 (ACOB85_21305) nfuA 2943114..2943698 (+) 585 WP_005379313.1 Fe-S biogenesis protein NfuA -
  ACOB85_RS21310 (ACOB85_21310) nudE 2943875..2944444 (+) 570 WP_005379309.1 ADP compounds hydrolase NudE -
  ACOB85_RS21315 (ACOB85_21315) cysQ 2944489..2945316 (+) 828 WP_005379308.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ACOB85_RS21320 (ACOB85_21320) - 2945619..2946380 (-) 762 WP_222712369.1 type II secretion system protein N -
  ACOB85_RS21325 (ACOB85_21325) - 2946382..2946873 (-) 492 WP_005383002.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27823.08 Da        Isoelectric Point: 9.7698

>NTDB_id=1111400 ACOB85_RS21300 WP_033905914.1 2942291..2943016(+) (comF) [Vibrio alginolyticus strain HoVa25]
MLSHHWQNIMHRVLSSQCGLCRFPIQTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSICGECLSKPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFRRVRLAQSQRGNTKTSREQNLKGAFILNKRPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1111400 ACOB85_RS21300 WP_033905914.1 2942291..2943016(+) (comF) [Vibrio alginolyticus strain HoVa25]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTATTGAGCAGTCAATGCGGCCTGTGTCGGTTCCCTATTCAAAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCGGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAGAAAGAAGAAATGAGTACGGATAGTATTTGTGGTGAATGTCTTTCAAAGCCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGTTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTGCAGACTAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAGGCTCGCCCAATCACAGCGTGGTAATACCAAAACAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCGCCCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

70.954

100

0.71
  comF Vibrio cholerae strain A1552

47.917

99.585

0.477

Multiple sequence alignment