Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ACNR9V_RS05510 Genome accession   NZ_CP184786
Coordinates   1046001..1048358 (+) Length   785 a.a.
NCBI ID   WP_420768864.1    Uniprot ID   -
Organism   Parageobacillus thermoglucosidasius strain W-36     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1041001..1053358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNR9V_RS05490 (ACNR9V_05490) - 1041018..1041392 (-) 375 WP_003248929.1 TIGR04086 family membrane protein -
  ACNR9V_RS05495 (ACNR9V_05495) spoVB 1041462..1043024 (-) 1563 WP_003248930.1 stage V sporulation protein B -
  ACNR9V_RS05500 (ACNR9V_05500) - 1043142..1043438 (+) 297 WP_003248931.1 post-transcriptional regulator -
  ACNR9V_RS05505 (ACNR9V_05505) secDF 1043620..1045872 (+) 2253 WP_003248932.1 protein translocase subunit SecDF -
  ACNR9V_RS05510 (ACNR9V_05510) recJ 1046001..1048358 (+) 2358 WP_420768864.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ACNR9V_RS05515 (ACNR9V_05515) - 1048358..1048870 (+) 513 WP_003248934.1 adenine phosphoribosyltransferase -
  ACNR9V_RS05520 (ACNR9V_05520) - 1049059..1051254 (+) 2196 WP_003248936.1 RelA/SpoT family protein -
  ACNR9V_RS05525 (ACNR9V_05525) dtd 1051269..1051727 (+) 459 WP_003248937.1 D-aminoacyl-tRNA deacylase -
  ACNR9V_RS05530 (ACNR9V_05530) - 1051826..1052011 (+) 186 WP_061577858.1 hypothetical protein -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 87987.43 Da        Isoelectric Point: 5.4943

>NTDB_id=1111286 ACNR9V_RS05510 WP_420768864.1 1046001..1048358(+) (recJ) [Parageobacillus thermoglucosidasius strain W-36]
MLIAKTRWDVKRPDENIVKHLVEQLRIDPLIATLLVHRGVRTAEEANAFLYPLKQPFHDPFLLDGMERAVARIQRAIQDG
EHILVYGDYDADGVSSTTVMVSALKEAGAIVDFYIPNRFTEGYGPNEKAFRWAKDQGFSLIITVDNGIAAVKEVALANEL
GMDVIITDHHEVGPTLPEAYEIIHPKKPGSTYPFRELAGVGVAFKVAHALLGEVPRYLLDVAAIGTIADLVSLTGENRVL
VAQGLEQLRKTKRIGLRALCTQCGIDAEKIDEQTVGFIIAPRMNAAGRLGEADPAVRLLMTEDEEEAKRLAKEMDNLNRE
RQQLVAEIAEEAAQIIQEQFPPSENKVLVVAKEGWNPGVIGIVASRLVEQFYRPTIVLSIDAEKGIAKGSARSIHGFDMF
SSLSTCRDILLHFGGHPMAAGMTLSLEDVGELRRRLNALADDMLTDDDFTPITSIDAVCSVSDLTMVVAEQLEKFAPFGV
GNAKPLFLMENVSVETMRRVGADQSHLKAVFAQNGAAIDSVGFGFGYLRDEIAPDAKVSVVGELVINEWNHLRKPQLMIY
DMAVHECQLFDIRGMRDVRPLIAALPPDKRMLIMFREDTADALGIGAYKEEIYYAASAEEASRLCLDGRYVVLLDMPPSL
KMMKMLLRSSLPARIYALFYQRETHFFRTLPTREHFKWFYAFLRKRGMFNLAKHGGELARARGWTEETVWFMAKVFLELE
FITQRDGIVSLVPQPAKRDLSESPTYRLKQAQYELESLFLYSTYEQLKRCLFEMKGLHTYEEANA

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=1111286 ACNR9V_RS05510 WP_420768864.1 1046001..1048358(+) (recJ) [Parageobacillus thermoglucosidasius strain W-36]
ATGTTAATCGCAAAAACACGTTGGGATGTAAAACGGCCCGACGAAAATATCGTAAAGCATTTAGTGGAACAATTGCGGAT
CGATCCGCTTATTGCCACCCTTCTTGTCCATCGCGGAGTCCGCACGGCAGAGGAGGCAAACGCGTTTTTATATCCGCTGA
AACAACCGTTTCATGATCCGTTTTTGCTAGATGGGATGGAGCGGGCGGTCGCGCGGATTCAGCGGGCGATACAGGATGGG
GAGCATATTTTAGTATATGGCGATTATGATGCGGACGGCGTAAGCAGCACGACGGTAATGGTCAGTGCGCTGAAGGAAGC
TGGCGCCATTGTGGATTTTTACATTCCCAACCGCTTTACCGAAGGATATGGCCCGAATGAAAAAGCGTTTCGCTGGGCAA
AGGATCAGGGATTTTCCTTGATTATTACGGTCGATAATGGCATTGCCGCGGTGAAGGAAGTGGCGCTTGCCAACGAGCTC
GGGATGGATGTCATTATTACCGACCATCACGAAGTGGGGCCGACGCTGCCGGAAGCGTATGAAATCATTCATCCGAAAAA
GCCTGGAAGTACATATCCGTTTCGAGAATTAGCCGGGGTTGGAGTGGCGTTTAAAGTTGCGCATGCGCTGCTCGGAGAGG
TGCCGCGCTATTTATTGGATGTCGCCGCAATCGGAACGATCGCCGATCTCGTTTCCCTTACCGGCGAAAATCGCGTATTG
GTGGCGCAAGGGCTTGAGCAGTTGCGAAAGACAAAACGTATAGGATTGCGCGCATTGTGTACACAATGTGGGATAGACGC
AGAAAAAATTGACGAGCAAACGGTGGGATTTATCATTGCGCCGCGGATGAATGCGGCCGGGCGATTGGGGGAAGCCGATC
CCGCTGTAAGATTGCTGATGACGGAGGATGAAGAAGAAGCAAAAAGGCTTGCGAAAGAAATGGATAATTTAAACCGGGAA
CGGCAGCAGCTTGTCGCGGAAATCGCGGAAGAAGCGGCACAAATCATACAGGAACAATTTCCGCCATCCGAGAATAAAGT
GCTGGTGGTGGCCAAAGAAGGATGGAATCCCGGAGTCATTGGCATTGTTGCATCCCGGCTGGTCGAACAGTTTTATCGCC
CGACGATCGTGCTAAGCATTGATGCGGAAAAAGGAATTGCGAAAGGTTCGGCGCGAAGCATTCACGGGTTTGATATGTTT
TCAAGCTTGTCGACGTGCCGCGATATTTTGCTGCATTTTGGCGGCCATCCGATGGCAGCGGGAATGACGCTGTCTCTTGA
AGATGTTGGCGAATTGCGCCGGCGTCTTAACGCGCTTGCCGACGATATGCTGACAGACGATGATTTTACGCCAATAACAT
CGATTGACGCGGTTTGTTCCGTATCTGATTTAACCATGGTGGTGGCGGAGCAGCTGGAAAAATTCGCTCCATTTGGTGTC
GGTAATGCCAAACCTCTTTTTTTAATGGAAAATGTGTCAGTGGAAACGATGCGCCGCGTCGGTGCCGATCAATCGCATTT
AAAGGCCGTTTTTGCGCAAAATGGCGCTGCAATTGATAGCGTTGGCTTCGGCTTCGGATATTTGCGCGATGAAATCGCTC
CGGATGCGAAAGTGTCGGTTGTCGGCGAGCTTGTTATTAATGAGTGGAATCATCTTCGCAAGCCGCAGCTGATGATTTAT
GATATGGCGGTGCATGAATGCCAGCTGTTTGATATTCGCGGTATGCGCGATGTAAGGCCGCTGATTGCAGCGCTTCCGCC
AGATAAGCGGATGCTCATTATGTTTCGCGAAGATACGGCGGATGCGTTAGGAATCGGAGCATATAAAGAAGAGATTTATT
ATGCCGCCTCAGCGGAAGAAGCATCGCGGCTTTGTTTAGATGGCCGCTATGTGGTGCTGTTGGATATGCCTCCGTCTTTG
AAAATGATGAAAATGTTATTACGTTCTAGTTTACCTGCACGCATTTATGCGTTATTCTATCAAAGGGAGACTCATTTTTT
CCGCACGTTGCCGACGCGTGAACATTTTAAGTGGTTTTACGCGTTTTTGCGGAAGCGGGGCATGTTTAATTTGGCGAAAC
ACGGCGGAGAGTTGGCACGTGCGCGTGGCTGGACGGAAGAAACCGTCTGGTTTATGGCGAAAGTGTTTCTTGAACTGGAA
TTTATAACGCAACGGGATGGCATCGTATCGCTTGTTCCTCAGCCGGCTAAGCGAGATTTAAGCGAATCGCCGACTTATCG
CTTGAAACAAGCTCAGTATGAGCTGGAAAGTCTTTTTTTATATTCCACATATGAACAATTAAAGCGGTGTCTTTTTGAAA
TGAAAGGTTTGCACACATATGAGGAGGCAAATGCATAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(305-439)

RecJ OB domain (RecJ_OB)

(455-561)

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.393

98.599

0.536

Multiple sequence alignment