Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACNR93_RS05375 Genome accession   NZ_CP184736
Coordinates   1072847..1074619 (-) Length   590 a.a.
NCBI ID   WP_420543264.1    Uniprot ID   -
Organism   Streptococcus equinus strain NM-2-29     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1070868..1089304 1072847..1074619 within 0


Gene organization within MGE regions


Location: 1070868..1089304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNR93_RS05370 (ACNR93_05370) - 1070868..1072739 (-) 1872 WP_420543263.1 hypothetical protein -
  ACNR93_RS05375 (ACNR93_05375) rcrQ 1072847..1074619 (-) 1773 WP_420543264.1 ABC transporter ATP-binding protein Regulator
  ACNR93_RS05380 (ACNR93_05380) rcrP 1074609..1076423 (-) 1815 WP_420543265.1 ABC transporter ATP-binding protein Regulator
  ACNR93_RS05385 (ACNR93_05385) rcrR 1076427..1076867 (-) 441 WP_420543266.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  ACNR93_RS05390 (ACNR93_05390) - 1077015..1077425 (-) 411 WP_420543267.1 peptide deformylase -
  ACNR93_RS05395 (ACNR93_05395) - 1077428..1077931 (-) 504 WP_420543268.1 GNAT family N-acetyltransferase -
  ACNR93_RS05400 (ACNR93_05400) gdhA 1078084..1079433 (-) 1350 WP_021142476.1 NADP-specific glutamate dehydrogenase -
  ACNR93_RS05405 (ACNR93_05405) - 1079664..1080161 (+) 498 WP_420543269.1 DUF308 domain-containing protein -
  ACNR93_RS05410 (ACNR93_05410) queF 1080200..1080691 (-) 492 WP_021142478.1 preQ(1) synthase -
  ACNR93_RS05415 (ACNR93_05415) queE 1080707..1081420 (-) 714 WP_420543270.1 7-carboxy-7-deazaguanine synthase QueE -
  ACNR93_RS05420 (ACNR93_05420) queD 1081413..1081859 (-) 447 WP_420543271.1 6-carboxytetrahydropterin synthase QueD -
  ACNR93_RS05425 (ACNR93_05425) queC 1081859..1082512 (-) 654 WP_420543272.1 7-cyano-7-deazaguanine synthase QueC -
  ACNR93_RS05430 (ACNR93_05430) - 1082678..1084447 (-) 1770 WP_420543273.1 ABC transporter ATP-binding protein -
  ACNR93_RS05435 (ACNR93_05435) - 1084450..1086189 (-) 1740 WP_420543274.1 ABC transporter ATP-binding protein -
  ACNR93_RS05440 (ACNR93_05440) - 1086234..1088102 (-) 1869 WP_420543275.1 ABC-F family ATP-binding cassette domain-containing protein -
  ACNR93_RS05445 (ACNR93_05445) - 1088099..1089304 (-) 1206 WP_024343955.1 CCA tRNA nucleotidyltransferase -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 65270.20 Da        Isoelectric Point: 4.8465

>NTDB_id=1110951 ACNR93_RS05375 WP_420543264.1 1072847..1074619(-) (rcrQ) [Streptococcus equinus strain NM-2-29]
MENNKKASFYSRMKPYIKGFQFPFILAVIGAIISATITVIGPDKLKEITNTIMDGLTPTKMGTIPGVDLDKVGEIALTLA
ILYGVSAVVGYIQNFTVATIVQRFSQRLRAAIQVKIDRVPLNYFDSHSQGDTLSRVTNDVDLLAQSLNQSLGTLVTSVVL
LFGSIFMMFHSNVSMALTAIGSVFIGFLLVIVIMGSSQPLFKRQQNNLAAVNGYVEEIYSGHNVVTSYNASEETSEAFKK
LNTNLYKSMWQSQFLSGIMMPLMIFIGNFGYVMVCVVGAVKVINGDITMGDVVAFMTYVRIFSQPLSQIAQAFTQMQSAT
AAMSRVFEFLEEEEMEDDSHKERQLTAVKGEVAFDNVFFGYSKDKTIIHDFSAVAKPGQKVAIVGPTGAGKTTIVNLLMK
FYEIDKGQISIDGIDTRKMSREEVHDQFSMVLQDTWLFEGTITENLIYNQENITDEQVVAAAKAVGVHHFIMTLPDGYDT
YLDDSVTLSIGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIKNADLILVMKD
GNIIEQGNHDELMTEGGFYADLYNSQFEVA

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=1110951 ACNR93_RS05375 WP_420543264.1 1072847..1074619(-) (rcrQ) [Streptococcus equinus strain NM-2-29]
ATGGAAAATAATAAAAAAGCATCTTTCTATAGCAGAATGAAGCCATATATCAAAGGTTTCCAATTTCCATTCATCCTTGC
GGTGATTGGAGCGATTATTTCTGCGACTATCACGGTTATTGGACCTGATAAATTAAAAGAGATTACAAATACGATTATGG
ACGGATTGACACCTACGAAAATGGGAACAATTCCAGGTGTTGATTTGGATAAAGTCGGAGAAATTGCATTGACACTTGCT
ATTTTGTATGGTGTCTCAGCTGTGGTTGGTTATATTCAAAACTTTACAGTTGCCACAATCGTTCAACGTTTTTCACAACG
ATTACGTGCAGCTATTCAAGTTAAAATTGACCGTGTTCCACTAAATTATTTTGATAGTCATTCACAAGGTGATACACTTT
CTCGTGTGACAAACGATGTTGACTTACTTGCTCAATCACTTAACCAAAGTTTGGGAACATTAGTGACTTCTGTTGTGCTT
TTGTTTGGTTCAATTTTCATGATGTTCCACTCAAATGTCAGCATGGCTTTGACAGCTATCGGTTCAGTTTTCATTGGTTT
TCTTCTAGTTATCGTTATTATGGGTTCATCACAACCATTGTTTAAACGTCAACAAAATAACTTGGCAGCAGTCAATGGTT
ATGTCGAAGAAATTTATTCTGGACATAATGTGGTAACAAGTTACAATGCTTCTGAAGAAACAAGTGAAGCTTTTAAAAAA
TTAAACACAAATCTTTACAAATCAATGTGGCAATCACAATTCTTGTCTGGTATTATGATGCCGCTGATGATTTTCATTGG
TAACTTTGGTTACGTTATGGTCTGTGTTGTTGGTGCCGTCAAAGTTATTAACGGTGATATTACAATGGGTGACGTGGTTG
CCTTTATGACTTATGTTCGTATCTTCTCACAACCATTGTCACAGATCGCGCAAGCCTTCACACAAATGCAATCAGCAACT
GCTGCAATGAGCCGTGTCTTTGAATTCCTTGAAGAAGAGGAAATGGAAGACGATTCTCACAAAGAACGTCAATTGACAGC
TGTTAAAGGTGAGGTTGCCTTTGATAATGTCTTCTTTGGTTATTCTAAAGATAAAACGATTATTCATGATTTTTCAGCGG
TTGCTAAACCAGGACAAAAAGTGGCTATCGTTGGACCGACTGGTGCTGGTAAAACAACCATTGTTAATTTGCTTATGAAA
TTCTATGAAATCGATAAGGGTCAAATCTCAATTGATGGTATCGACACTCGTAAGATGTCACGAGAAGAAGTTCACGACCA
ATTCTCAATGGTGCTTCAAGATACTTGGTTGTTTGAAGGTACAATCACAGAAAACTTGATTTACAACCAAGAAAATATTA
CAGATGAACAAGTGGTTGCCGCAGCTAAAGCAGTCGGTGTTCACCACTTTATCATGACGCTTCCTGATGGATATGATACT
TATCTTGATGACTCAGTAACTCTTTCAATTGGTCAAAAACAACTTTTGACAATTGCGCGTGCGCTCTTGAAAGATGCTCC
GCTTCTTATCTTGGATGAGGCAACGTCATCAGTTGATACACGTACTGAAGAATTGATTCAAAAAGCTATGGATAAATTGA
TGGAAGGTCGCACATCATTTGTAATTGCTCACCGTCTATCAACTATTAAAAACGCTGATCTTATCCTTGTTATGAAAGAT
GGTAACATCATCGAACAAGGAAATCATGATGAGTTGATGACAGAAGGTGGCTTCTATGCTGACCTTTACAACTCACAGTT
TGAAGTAGCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(370-516)

ABC transporter transmembrane region (ABC_membrane)

(24-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

72.666

99.831

0.725

Multiple sequence alignment