Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   ACNR93_RS03415 Genome accession   NZ_CP184736
Coordinates   665492..666355 (+) Length   287 a.a.
NCBI ID   WP_420543917.1    Uniprot ID   -
Organism   Streptococcus equinus strain NM-2-29     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 660492..671355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNR93_RS03385 (ACNR93_03385) - 660710..661585 (+) 876 WP_420543914.1 F0F1 ATP synthase subunit gamma -
  ACNR93_RS03390 (ACNR93_03390) atpD 661651..663057 (+) 1407 WP_024344335.1 F0F1 ATP synthase subunit beta -
  ACNR93_RS03395 (ACNR93_03395) - 663070..663486 (+) 417 WP_420543915.1 F0F1 ATP synthase subunit epsilon -
  ACNR93_RS03400 (ACNR93_03400) - 663628..663864 (+) 237 WP_021142001.1 DUF1146 family protein -
  ACNR93_RS03405 (ACNR93_03405) murA 663927..665201 (+) 1275 WP_420543916.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACNR93_RS03410 (ACNR93_03410) - 665204..665392 (+) 189 WP_024344337.1 DNA-directed RNA polymerase subunit beta -
  ACNR93_RS03415 (ACNR93_03415) endA 665492..666355 (+) 864 WP_420543917.1 DNA/RNA non-specific endonuclease Machinery gene
  ACNR93_RS03420 (ACNR93_03420) pheS 666644..667687 (+) 1044 WP_420543918.1 phenylalanine--tRNA ligase subunit alpha -
  ACNR93_RS03425 (ACNR93_03425) - 667719..668243 (+) 525 WP_021142007.1 GNAT family N-acetyltransferase -
  ACNR93_RS03430 (ACNR93_03430) pheT 668313..670718 (+) 2406 WP_420543919.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 30542.67 Da        Isoelectric Point: 7.4130

>NTDB_id=1110945 ACNR93_RS03415 WP_420543917.1 665492..666355(+) (endA) [Streptococcus equinus strain NM-2-29]
MAKKSNLSKKTKSIISLLVLLVGIGTGCVTTSDSSDPVSQVLSLVTGESSSVTSNHSSANESAPSQELAESVLTDNVKEQ
LGSTIEWNGAGAYLVNGNKTSLNAKVASKPYANNKTKVVQGQSVPTVANALLSKSTRQYRSREETGNGSTSWTPAGWHQV
QNLSGTYSHAVDRGHLLGYALVGGLKGFDASTSNPENVATQTAWANEARSEDSTGQNYYEGLVRRALDQNKRVRYRVTLI
YDGDNILASGTHLEAKSSDGSLEFNVFVPNVQSGLTIDYYSGQVSVN

Nucleotide


Download         Length: 864 bp        

>NTDB_id=1110945 ACNR93_RS03415 WP_420543917.1 665492..666355(+) (endA) [Streptococcus equinus strain NM-2-29]
ATGGCAAAAAAATCAAATCTGTCTAAAAAGACAAAATCAATTATCTCTTTACTGGTTTTATTAGTTGGTATCGGTACAGG
GTGTGTAACGACATCTGATTCTAGTGACCCAGTCAGTCAAGTTTTATCCCTTGTTACGGGAGAATCATCATCGGTTACTT
CAAATCATTCAAGTGCTAATGAATCAGCACCAAGTCAGGAATTGGCTGAGTCAGTTTTAACTGATAATGTTAAAGAACAG
TTAGGCTCAACTATTGAATGGAATGGAGCAGGGGCTTATCTTGTAAATGGAAATAAAACCTCTTTGAATGCAAAGGTTGC
AAGCAAACCTTATGCCAATAATAAGACGAAAGTTGTACAAGGACAGTCAGTTCCGACAGTTGCTAACGCACTTTTGAGTA
AGTCAACCCGTCAATACCGAAGCCGTGAGGAAACAGGTAATGGCTCAACCTCTTGGACGCCAGCTGGTTGGCATCAAGTA
CAAAATCTATCTGGAACTTATAGCCATGCGGTTGATCGTGGGCATTTGCTTGGATACGCTTTAGTTGGTGGGCTAAAAGG
TTTTGATGCCTCAACAAGTAACCCTGAAAATGTTGCTACTCAGACAGCTTGGGCAAATGAGGCTAGATCAGAAGATTCAA
CAGGACAGAATTACTATGAAGGGCTTGTCCGTCGAGCACTTGATCAGAATAAACGCGTTCGTTATCGTGTGACTTTGATT
TATGATGGGGACAATATTTTAGCTAGTGGAACACATTTAGAAGCAAAATCATCTGACGGTAGTTTAGAGTTTAATGTCTT
TGTTCCAAACGTTCAAAGTGGACTTACGATTGACTATTATTCTGGTCAGGTTAGTGTGAATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(95-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

72

78.397

0.564
  endA Streptococcus pneumoniae D39

72

78.397

0.564
  endA Streptococcus pneumoniae R6

72

78.397

0.564
  endA Streptococcus pneumoniae TIGR4

72

78.397

0.564

Multiple sequence alignment