Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ID09_RS10710 Genome accession   NZ_CP008921
Coordinates   2181422..2182708 (+) Length   428 a.a.
NCBI ID   WP_024381238.1    Uniprot ID   -
Organism   Streptococcus suis 6407     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2176422..2187708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID09_RS12555 (ID09_10945) - 2177367..2177489 (-) 123 WP_024381232.1 membrane protein -
  ID09_RS10685 (ID09_10950) - 2177494..2178240 (-) 747 WP_024381233.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  ID09_RS10690 (ID09_10955) prmA 2178242..2179195 (-) 954 WP_024381234.1 50S ribosomal protein L11 methyltransferase -
  ID09_RS12520 - 2179423..2179536 (+) 114 WP_015647538.1 putative holin-like toxin -
  ID09_RS10695 (ID09_10960) - 2179697..2180050 (-) 354 WP_024381235.1 ASCH domain-containing protein -
  ID09_RS10700 (ID09_10965) - 2180052..2180522 (-) 471 WP_024381236.1 DUF3013 family protein -
  ID09_RS10705 (ID09_10970) - 2180592..2181410 (+) 819 WP_024381237.1 GIY-YIG nuclease family protein -
  ID09_RS10710 (ID09_10975) rarA 2181422..2182708 (+) 1287 WP_024381238.1 replication-associated recombination protein A Machinery gene
  ID09_RS10715 (ID09_10980) - 2183024..2184226 (+) 1203 WP_079376572.1 IS110 family transposase -
  ID09_RS10725 (ID09_10990) nrdG 2184813..2185370 (-) 558 WP_002939123.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  ID09_RS10735 (ID09_11000) - 2185557..2186051 (-) 495 WP_024381239.1 GNAT family N-acetyltransferase -
  ID09_RS10740 (ID09_11005) - 2186053..2187399 (-) 1347 WP_024381240.1 bifunctional metallophosphatase/5'-nucleotidase -
  ID09_RS12560 - 2187401..2187535 (-) 135 WP_002939130.1 hypothetical protein -

Sequence

Protein


Download         Length: 428 a.a.        Molecular weight: 47324.93 Da        Isoelectric Point: 6.4389

>NTDB_id=110897 ID09_RS10710 WP_024381238.1 2181422..2182708(+) (rarA) [Streptococcus suis 6407]
MPANLALRMRPKSIDEVIGQEHLVGPGKIIRRMIDANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATTDNQKRL
QEIAEEAKFSGGLVLLLDEIHRLNKTKQDFLLPLLENGNIIMIGATTENPFFSILPAIRSRVQIFELQPLKTSHIRQALE
LALTDSERGFDFPITIEPEALDFLANATNGDLRAAYNSLELAVLSTKESDDGSRHIDLDAVENSLQKSYISMDKNGDAHY
DILSALQKSIRGSDVNASLHYAARLIEAEDLPSLARRLTVIAYEDIGLANPEAQIHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALADLRKNGHLPIPNHLRDGHYAGSKEPGNAIGYQYPHAYPEKWVDQQYLPDKLLNADYFTA
NDTGKYERALGMTQEKIKNLKKNRRQNP

Nucleotide


Download         Length: 1287 bp        

>NTDB_id=110897 ID09_RS10710 WP_024381238.1 2181422..2182708(+) (rarA) [Streptococcus suis 6407]
ATGCCAGCCAATCTCGCTCTTCGTATGCGGCCCAAATCCATTGATGAGGTCATCGGTCAGGAACACCTGGTCGGTCCTGG
AAAGATTATCCGTCGCATGATTGATGCCAATATGCTGTCGTCTATGATTCTCTACGGTCCGCCGGGAATTGGCAAGACCT
CGATTGCGTCCGCAATTGCTGGCACGACCAAGTATGCCTTTCGGACCTTTAATGCCACGACCGACAACCAAAAACGCCTG
CAGGAAATCGCTGAAGAAGCTAAATTTTCCGGTGGTTTGGTTCTACTGCTCGATGAAATCCACCGACTCAACAAGACCAA
GCAGGACTTCCTGCTCCCTCTTTTGGAAAATGGCAATATCATCATGATTGGGGCAACGACGGAAAATCCATTTTTCTCTA
TTTTACCCGCCATTCGCAGTCGGGTGCAGATTTTTGAATTACAACCCTTGAAAACCAGCCATATCCGACAGGCCTTGGAA
CTGGCTCTGACAGACAGCGAACGTGGTTTTGACTTCCCTATTACCATTGAGCCTGAGGCTCTGGATTTCCTAGCCAATGC
TACCAACGGTGACCTTCGTGCCGCCTACAATTCGCTGGAACTGGCTGTGCTTTCGACCAAGGAAAGTGACGACGGTAGCC
GCCACATTGATCTGGACGCCGTGGAAAATAGCCTGCAAAAGTCCTACATCAGCATGGACAAGAACGGCGATGCCCACTAC
GATATCCTCTCCGCCCTACAAAAATCCATTCGAGGTAGCGATGTCAATGCCAGCCTCCACTACGCCGCTCGTTTGATTGA
GGCCGAAGATCTGCCTAGTCTGGCCCGTCGCTTGACGGTCATTGCCTACGAAGACATCGGCTTGGCCAATCCAGAGGCTC
AGATTCATACGGTGACGGCCCTTGAAGCCGCCCAGAAAATTGGCTTTCCAGAGGCACGCATTTTGATTGCCAATGTGGTA
ATTGATTTGGCTCTTTCTCCCAAGTCCAATTCTGCCTATCTGGCTATGGATGCAGCTCTGGCTGATTTGCGGAAAAACGG
CCATCTGCCTATTCCAAATCATCTTCGGGACGGTCACTATGCCGGTAGTAAGGAGCCGGGAAATGCTATTGGCTATCAGT
ATCCGCATGCCTATCCTGAAAAATGGGTGGACCAACAATACCTGCCCGATAAGTTACTAAATGCGGACTACTTTACTGCC
AACGACACTGGAAAATATGAGCGTGCCTTGGGTATGACACAAGAAAAGATAAAAAATTTGAAAAAAAATAGACGCCAAAA
TCCTTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.569

97.664

0.582

Multiple sequence alignment