Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ID09_RS05605 Genome accession   NZ_CP008921
Coordinates   1159833..1161575 (-) Length   580 a.a.
NCBI ID   WP_024381350.1    Uniprot ID   -
Organism   Streptococcus suis 6407     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1154833..1166575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID09_RS05580 (ID09_05740) - 1155487..1156029 (-) 543 WP_024381346.1 hypothetical protein -
  ID09_RS05585 (ID09_05745) - 1156049..1156519 (-) 471 WP_024381347.1 hypothetical protein -
  ID09_RS05590 (ID09_05750) - 1156650..1157450 (+) 801 WP_024381348.1 helix-turn-helix domain-containing protein -
  ID09_RS05595 (ID09_05755) mutY 1158113..1159273 (-) 1161 WP_024381349.1 A/G-specific adenine glycosylase -
  ID09_RS05600 (ID09_05760) - 1159457..1159849 (-) 393 WP_029693807.1 PaaI family thioesterase -
  ID09_RS05605 (ID09_05765) rcrQ 1159833..1161575 (-) 1743 WP_024381350.1 ABC transporter ATP-binding protein Regulator
  ID09_RS05610 (ID09_05770) - 1161562..1163301 (-) 1740 WP_024381351.1 ABC transporter ATP-binding protein -
  ID09_RS05615 (ID09_05775) pta 1163303..1164277 (-) 975 WP_002935239.1 phosphate acetyltransferase -
  ID09_RS05620 (ID09_05780) - 1164295..1165188 (-) 894 WP_002935240.1 RluA family pseudouridine synthase -
  ID09_RS05625 (ID09_05785) - 1165188..1166006 (-) 819 WP_002935241.1 NAD kinase -

Sequence

Protein


Download         Length: 580 a.a.        Molecular weight: 64436.53 Da        Isoelectric Point: 5.0946

>NTDB_id=110862 ID09_RS05605 WP_024381350.1 1159833..1161575(-) (rcrQ) [Streptococcus suis 6407]
MRQSSFKELVRLVLGQPFRMSLMLVGTLVQVLLTVYLPILIGQAVDAVLIANGQVLLGILGKMVMVILLNTLMQWYLPLV
TNRLVYGMVADLREQVYVKLHQMPLSYLDRQSVGDLVARFSSDSEQLSNGLLMIFNQFFIGILTIFLTIFTMARLDLTMM
LLVVALTPVSLLVARYIAKKSYGYYRQQTQARGKQSQLLEESISQLTLVQSFNAQEQFTQGFQVVNEQYATYSQQAIFAS
STVNPSTRFINAIIYALLAGLGALRIMAGNFTVGSLTTFLNYASQYSKPFNDISSVLSELQSALACADRLFAILALDSID
DQAERKIDSEELKGAISFDNVSFSYSPDRSLIEHLDIDVKAGQKVAIVGPTGAGKSTMINLLMRFYDVTAGQIVLDGVSI
SQYSREDLRRQIGMVLQETWIKSGTIHDNIAYGYPNATRELVIEAAKAANADFFIRQLPQGYDTVLADGGEGLSQGQRQL
LSIARVFVKIPKILILDEATSSIDTRTEILVQEAFAKLMEGRTSFIIAHRLSTIQSADLILVMVDGKIVEQGNHEALMAE
QGVYYQMQTSQQTEEDESVR

Nucleotide


Download         Length: 1743 bp        

>NTDB_id=110862 ID09_RS05605 WP_024381350.1 1159833..1161575(-) (rcrQ) [Streptococcus suis 6407]
ATGAGACAATCTAGTTTTAAGGAACTGGTCAGATTGGTTTTAGGCCAACCCTTTCGAATGTCTTTGATGTTGGTGGGAAC
TTTGGTGCAAGTCCTTCTGACAGTTTATCTGCCTATCTTGATTGGTCAGGCAGTTGATGCAGTATTGATAGCAAATGGTC
AGGTCTTGCTCGGTATCTTAGGCAAAATGGTGATGGTTATCTTGCTTAATACACTGATGCAATGGTACTTACCTTTGGTA
ACCAATCGCTTGGTTTACGGAATGGTAGCCGACTTGCGTGAACAGGTTTATGTGAAGCTGCACCAGATGCCCCTATCTTA
TCTGGATCGTCAATCAGTCGGTGATTTGGTGGCTCGTTTTTCAAGTGATAGCGAGCAATTATCAAATGGTCTCTTGATGA
TTTTCAATCAATTTTTCATTGGTATCTTGACCATTTTCCTAACCATTTTCACTATGGCTAGGCTTGACTTGACGATGATG
TTGCTGGTTGTGGCATTGACTCCAGTTTCTCTGCTTGTGGCACGCTATATCGCTAAGAAATCCTATGGTTATTATAGGCA
ACAGACTCAGGCACGTGGGAAGCAATCTCAGCTTTTGGAAGAGTCCATCAGTCAATTGACACTGGTTCAATCTTTCAATG
CTCAAGAGCAATTTACGCAAGGTTTTCAAGTTGTGAATGAACAGTATGCGACCTATTCTCAACAGGCTATCTTTGCCTCT
TCAACGGTCAATCCAAGTACGCGGTTTATCAATGCTATTATTTATGCCTTACTTGCAGGACTTGGAGCGCTGAGAATTAT
GGCAGGAAATTTTACAGTGGGATCTCTGACAACCTTCCTCAATTATGCTAGTCAGTACAGCAAGCCTTTTAATGATATTT
CCTCGGTCCTATCGGAATTGCAGAGCGCCTTAGCTTGTGCAGACAGGCTGTTTGCTATCTTGGCTCTAGATAGCATTGAT
GATCAGGCTGAGCGGAAAATTGATTCAGAGGAGTTGAAGGGAGCTATTTCCTTTGACAATGTGTCTTTCTCTTATAGCCC
TGACCGTTCTCTGATAGAACATCTGGACATTGATGTCAAAGCTGGACAAAAAGTAGCCATTGTTGGACCTACTGGTGCTG
GTAAATCAACCATGATCAATCTTCTCATGCGTTTCTATGATGTGACGGCTGGTCAGATTGTCTTAGATGGTGTTTCGATT
AGCCAGTACAGTCGTGAGGATCTCCGCAGACAGATTGGGATGGTTTTACAGGAGACATGGATCAAATCTGGTACCATTCA
TGATAATATTGCCTATGGCTATCCAAATGCCACGCGGGAATTGGTCATTGAGGCGGCTAAGGCAGCCAATGCAGACTTCT
TTATTCGTCAGCTTCCGCAGGGCTACGATACGGTTTTGGCAGATGGAGGAGAAGGCTTATCCCAGGGACAACGTCAGCTT
TTGTCTATTGCGCGTGTCTTTGTCAAGATACCTAAAATCCTGATTTTAGATGAGGCGACTTCCTCTATTGATACACGGAC
AGAAATTTTAGTACAGGAAGCATTTGCCAAATTGATGGAAGGACGGACCAGTTTTATTATTGCTCATCGCCTATCAACCA
TTCAATCAGCTGACTTGATTTTGGTCATGGTGGATGGAAAAATTGTTGAACAAGGGAATCATGAAGCGTTGATGGCTGAA
CAAGGCGTTTATTATCAAATGCAAACAAGTCAGCAGACAGAGGAGGATGAAAGTGTTAGATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(22-289)

ABC transporter (ABC_tran)

(354-501)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

37.649

100

0.381

Multiple sequence alignment