Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   ID09_RS01130 Genome accession   NZ_CP008921
Coordinates   207999..210332 (+) Length   777 a.a.
NCBI ID   WP_024382076.1    Uniprot ID   -
Organism   Streptococcus suis 6407     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 202999..215332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID09_RS01110 (ID09_01120) treP 203982..205976 (-) 1995 WP_024382077.1 PTS system trehalose-specific EIIBC component -
  ID09_RS01115 (ID09_01125) treR 206210..206923 (+) 714 WP_012774930.1 trehalose operon repressor Regulator
  ID09_RS01120 (ID09_01130) - 206981..207292 (+) 312 WP_002935948.1 hypothetical protein -
  ID09_RS01125 (ID09_01135) - 207289..207837 (+) 549 WP_002935945.1 CvpA family protein -
  ID09_RS01130 (ID09_01140) mutS/mutS2 207999..210332 (+) 2334 WP_024382076.1 endonuclease MutS2 Machinery gene
  ID09_RS01135 (ID09_01145) - 210356..211068 (+) 713 Protein_187 GNAT family N-acetyltransferase -
  ID09_RS01140 (ID09_01150) trxA 211431..211745 (+) 315 WP_024382075.1 thioredoxin -
  ID09_RS12620 - 211856..211906 (-) 51 WP_353735889.1 hypothetical protein -
  ID09_RS01145 (ID09_01155) - 211896..213425 (+) 1530 WP_024390718.1 AMP-binding protein -
  ID09_RS01150 (ID09_01160) msrB 213465..214403 (+) 939 WP_024390717.1 peptide-methionine (R)-S-oxide reductase MsrB -
  ID09_RS01155 (ID09_01165) - 214534..215166 (+) 633 WP_228380938.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 777 a.a.        Molecular weight: 87523.23 Da        Isoelectric Point: 6.8322

>NTDB_id=110830 ID09_RS01130 WP_024382076.1 207999..210332(+) (mutS/mutS2) [Streptococcus suis 6407]
MNNKIIETLEFHKVRQKIEPYLLTEQGFEELRQLEPMVEVHRIQQAFDELTDIAQIFVENPYFSLAATSDIGPAMRRLEL
DTDLNIAELLAVKKVLEVSKSLLDFYGNLENVSLSQLDKLFEKIELFPHLQGSLQSINDAGFVEDFASEKLARTRRKIRE
AEDQVRQVMQDILKNKGDMLSDSILASRNGRNVLPVKNTYRNKIAGVVHDISASGSTVYIEPRAVVTLNEEISHLRAEER
HELNRILQELSDMLRPHSGVIRNNAWLIGHIDFVRAKHLFAREHQAVVPKLSEKQDIALLNVRHPLIAKPVPNDLYFGSQ
LTAIVITGPNTGGKTIMLKTLGLTHLMAQSGLPILADKGSRVAIFKEIFADIGDEQSIEQSLSTFSSHMTHTVEILRAAD
QDSLILFDELGAGTDPQEGASLAMAILDDLRLRGIKTMATTHYPELKAYGIETSGIENASMEFDSNSLRPTYKFMQGVPG
RSNAFEIARRLGLSDIIIQSAQSWTDTDSDVNRIIEKLESQTVESRQRLDKIRDVEQENYKMNRALRKLYDELNRERENE
LNKARLEAKEIVDMALAESEDILKNLHAAASLKPHQIIEAKAELKKLAPEVVDLSKNKVLKKAKIQREAKVGDDIIVTAY
GQRGTLTNQLKGGRWEAQVGLIKMTLAKDEFELVKAEKAEQPKKRQVHTVKRANVRGPKARLDLRGKRYEEAMMELDEFI
DQALLNNLAQVDIVHGIGTGVIREGVTKYLRRNKQVKEFGYAPQNAGGSGCTIVTFK

Nucleotide


Download         Length: 2334 bp        

>NTDB_id=110830 ID09_RS01130 WP_024382076.1 207999..210332(+) (mutS/mutS2) [Streptococcus suis 6407]
ATGAATAATAAAATTATTGAAACCCTTGAATTTCACAAGGTAAGACAAAAAATTGAGCCCTATCTCTTGACGGAACAGGG
CTTTGAAGAATTACGACAGTTGGAGCCCATGGTGGAAGTCCACCGTATCCAACAGGCCTTCGACGAGTTGACAGACATAG
CGCAGATTTTTGTGGAAAATCCCTATTTCAGTCTGGCTGCTACTAGTGACATCGGTCCAGCCATGCGTCGTTTGGAATTG
GATACAGACCTCAATATCGCTGAATTATTAGCTGTTAAAAAGGTCTTGGAAGTTTCTAAATCTCTCTTGGATTTTTATGG
AAATCTGGAAAATGTCAGTCTTAGCCAGCTGGATAAACTCTTTGAGAAAATCGAGCTCTTTCCCCACTTACAAGGTTCGC
TCCAGTCTATCAATGATGCAGGCTTTGTCGAGGATTTTGCTTCTGAAAAGCTAGCTCGTACCCGCAGGAAGATTCGTGAA
GCTGAGGACCAGGTTCGTCAGGTCATGCAGGATATCTTGAAGAACAAGGGGGATATGCTGTCCGACAGCATCTTGGCTAG
TCGTAATGGGCGCAATGTCCTTCCTGTCAAAAATACCTATCGCAATAAGATTGCGGGTGTAGTCCATGATATCTCCGCCT
CAGGTTCGACCGTTTATATTGAGCCGCGGGCAGTGGTGACCTTGAACGAAGAAATCAGTCACCTACGTGCAGAAGAACGC
CATGAGCTCAACCGTATCTTGCAGGAATTGTCGGATATGCTCCGTCCGCATAGTGGCGTGATTCGTAACAATGCCTGGCT
TATCGGGCATATTGATTTCGTCCGTGCTAAGCATCTCTTTGCGCGTGAACATCAAGCAGTTGTACCCAAACTATCTGAGA
AGCAGGATATTGCTCTTCTCAACGTTCGACATCCGCTCATTGCTAAGCCTGTACCAAATGACCTTTATTTCGGTAGTCAG
TTGACGGCTATCGTGATAACAGGTCCCAACACAGGTGGTAAAACCATCATGCTTAAGACCTTGGGATTGACCCATCTGAT
GGCCCAGTCTGGTTTGCCTATTTTGGCTGATAAGGGCAGTCGGGTAGCTATCTTCAAAGAAATTTTTGCGGATATTGGTG
ATGAACAGTCGATTGAGCAGAGTTTATCAACCTTCTCCAGTCACATGACCCACACGGTGGAAATTTTAAGAGCAGCTGAT
CAAGATTCTCTCATTCTATTTGACGAGTTGGGAGCTGGGACAGATCCGCAAGAGGGTGCGTCTTTGGCTATGGCCATCTT
AGATGACCTTCGTTTGCGGGGGATCAAGACCATGGCGACCACCCACTACCCTGAGCTTAAGGCCTACGGGATAGAAACCT
CTGGTATTGAAAATGCCAGCATGGAATTTGATAGCAATAGCCTGCGTCCGACCTATAAGTTTATGCAGGGTGTTCCTGGT
CGCTCCAATGCCTTTGAAATTGCCCGCCGTCTTGGTCTATCTGATATTATTATCCAGTCAGCCCAATCTTGGACGGATAC
AGATAGCGATGTGAACCGCATTATCGAGAAATTGGAAAGTCAGACGGTTGAAAGTCGTCAGCGTCTGGATAAGATTCGTG
ATGTGGAGCAAGAAAATTACAAGATGAACCGAGCCCTCCGCAAGCTCTATGACGAGCTCAATCGTGAGCGAGAAAATGAG
CTCAACAAGGCACGCTTGGAGGCCAAGGAAATTGTAGATATGGCATTGGCAGAAAGCGAGGATATTCTCAAAAATCTGCA
TGCTGCAGCCAGTCTTAAGCCTCACCAGATTATCGAAGCCAAGGCAGAGCTGAAAAAGTTGGCGCCTGAAGTGGTGGATC
TGTCTAAAAACAAGGTTCTGAAGAAAGCTAAAATTCAGAGGGAAGCCAAGGTGGGTGATGACATTATCGTTACAGCTTAT
GGACAACGTGGGACCTTGACCAATCAGCTCAAGGGCGGGCGTTGGGAAGCTCAGGTTGGCTTGATTAAGATGACCTTGGC
AAAAGATGAGTTTGAGTTAGTCAAGGCGGAAAAGGCAGAGCAGCCTAAGAAACGCCAGGTTCACACAGTCAAACGTGCCA
ATGTACGAGGACCAAAAGCCCGCTTAGATCTCCGTGGCAAACGCTACGAAGAGGCTATGATGGAACTGGATGAATTTATC
GATCAGGCCCTTCTCAATAACCTAGCCCAAGTCGATATTGTCCACGGTATTGGTACTGGAGTTATCCGAGAAGGGGTGAC
CAAGTACCTACGCCGAAACAAGCAGGTCAAGGAGTTCGGCTATGCCCCACAAAATGCAGGTGGATCAGGCTGTACTATTG
TGACGTTTAAATAG

Domains

Predicted by InterProScan.

MutS domain V (MutS_V)

(324-504)

MutS2 and Smr-associated SH3 domain (MSSS)

(631-670)

Smr domain (Smr)

(702-777)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

39.646

100

0.404

Multiple sequence alignment