Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   ID09_RS01080 Genome accession   NZ_CP008921
Coordinates   195128..197617 (-) Length   829 a.a.
NCBI ID   WP_024390722.1    Uniprot ID   -
Organism   Streptococcus suis 6407     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 190128..202617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID09_RS01055 (ID09_01065) - 190920..191951 (+) 1032 WP_011921803.1 ABC transporter substrate-binding protein -
  ID09_RS01060 (ID09_01070) - 192045..192854 (+) 810 WP_024390724.1 glucosamine-6-phosphate isomerase -
  ID09_RS12570 - 193077..195089 (+) 2013 Protein_175 heavy metal translocating P-type ATPase -
  ID09_RS01080 (ID09_01090) recD/recD2/recDB 195128..197617 (-) 2490 WP_024390722.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ID09_RS01085 (ID09_01095) lepB 197681..198310 (-) 630 WP_002935959.1 signal peptidase I -
  ID09_RS01090 (ID09_01100) rnhC 198320..199210 (-) 891 WP_014636770.1 ribonuclease HIII -
  ID09_RS01095 (ID09_01105) - 199295..200278 (+) 984 WP_024390721.1 Gfo/Idh/MocA family protein -
  ID09_RS01100 (ID09_01110) - 200621..201862 (+) 1242 WP_024390720.1 LysM peptidoglycan-binding domain-containing protein -

Sequence

Protein


Download         Length: 829 a.a.        Molecular weight: 93139.42 Da        Isoelectric Point: 4.5766

>NTDB_id=110828 ID09_RS01080 WP_024390722.1 195128..197617(-) (recD/recD2/recDB) [Streptococcus suis 6407]
MNEVYFTGTIDRIIFENPSNFYKILLLEIEETDADYDDYEIIVTGTIADVIEGEDYRFYGNLVTHPKYGQQLQISRYERS
KPTSAGLVKYFSSEHFKGIGRKTAEKIVELYGEDTIDKILAEPEKLTQITGLSSKNMQAFVEKLRLNYGTELILAKLAEY
GIPNKLAFQIQDQYKDKTLQIIEENPYQLVEDVQGLGFTIADRIAENLGIASDSPQRFRAGMLFSLIHRSMETGDTYVEA
RDLLEATLELLEKSRHTELDPAAVAKELTGLIADDKVQQEGTKIFDNSLYFAEHGIHTNLTRLMGKNGFKPFPRADVEAA
IAELESISSLTYDNIQKEAIVQAITNPLFILTGGPGTGKTTVINGIIAVYAILHKIDLTRNREECPVLLAAPTGRATRRM
NELTGLPSATIHRHLGLVEGQEESYRDDYLDADFIIVDEFSMVDTWLANQLFQNISSQTQVLIVGDAEQLPSVSPGQVLA
DLLKIDKLPSITLERIYRQSDDSTIVTLASQIRQGALPSDFREKKADRSYFEAQNEQIPALIERIVGAAIKSGIPANEVQ
ILAPMYRGAAGIDQLNTMTQALLNPLEEGELEFLHNEQAFRQGDRVIHLVNDAEANVFNGDLGYITDLLPAKYTDSKQDE
ITINFDGSEVTYPRNEWYKITLAYAMSIHKSQGSEFQVVILPITRTSHRMLQRNLVYTAITRSKSKLILLGEISAFDYAV
KNAGTVRKTYLVPRFQGEMAEQESKESLIKKDESKTATTTQTQPPTQPDRKEQVKVVKENNQQLSLLDQDQPEKTSPQPT
EYILTVDNLLTIDPMIGIEQADIEEFFKA

Nucleotide


Download         Length: 2490 bp        

>NTDB_id=110828 ID09_RS01080 WP_024390722.1 195128..197617(-) (recD/recD2/recDB) [Streptococcus suis 6407]
ATGAACGAAGTGTATTTTACCGGCACTATTGACCGGATTATTTTTGAAAATCCTAGTAATTTTTATAAAATCCTTCTCCT
TGAAATCGAGGAGACAGACGCAGACTATGATGACTACGAAATTATTGTGACCGGAACGATTGCCGATGTCATTGAAGGAG
AAGACTATCGTTTCTATGGCAATCTGGTCACCCATCCCAAGTATGGTCAGCAGCTGCAAATTTCGCGTTACGAACGCAGC
AAGCCTACCTCAGCTGGTCTGGTCAAGTATTTCTCCAGCGAGCATTTCAAGGGAATTGGACGCAAAACAGCTGAAAAAAT
CGTTGAGCTCTATGGCGAAGATACCATTGATAAGATTTTAGCTGAACCTGAAAAACTAACCCAAATCACAGGCCTATCCA
GCAAGAACATGCAGGCATTTGTCGAAAAACTCCGCCTCAATTATGGAACCGAGTTGATCTTGGCAAAACTAGCCGAGTAT
GGCATTCCCAATAAATTGGCCTTTCAAATCCAAGACCAGTATAAGGACAAAACACTTCAGATTATTGAAGAAAATCCCTA
TCAACTGGTCGAAGATGTCCAGGGGCTCGGCTTTACCATTGCCGATAGGATTGCGGAAAATCTAGGAATTGCCAGTGATT
CACCCCAACGTTTTCGGGCTGGCATGCTCTTTAGTCTCATTCATCGCTCCATGGAAACAGGCGATACCTATGTGGAGGCC
AGAGACTTGCTGGAAGCAACCCTTGAACTGCTGGAAAAATCCCGCCATACAGAGCTGGACCCCGCTGCTGTTGCCAAAGA
ATTGACGGGACTGATTGCAGACGACAAGGTACAGCAAGAAGGCACAAAGATTTTTGACAACAGCCTCTACTTTGCCGAAC
ATGGTATCCATACAAACCTAACTCGCCTGATGGGAAAAAACGGCTTCAAGCCCTTCCCACGCGCAGACGTCGAGGCTGCC
ATAGCAGAGCTGGAAAGCATATCTTCTCTCACCTACGATAACATTCAAAAAGAAGCCATTGTCCAAGCCATTACCAATCC
GCTTTTCATTCTGACAGGCGGGCCAGGGACTGGAAAAACAACGGTTATCAACGGCATTATCGCAGTCTATGCTATCTTGC
ATAAGATTGACCTGACGCGAAACCGAGAAGAATGCCCAGTCCTCCTAGCCGCTCCAACTGGACGAGCAACCAGACGGATG
AATGAATTGACAGGGCTGCCTTCCGCCACCATCCACCGCCATCTCGGTCTGGTAGAAGGACAGGAGGAATCCTACCGTGA
TGATTATTTGGATGCCGACTTTATCATCGTGGATGAGTTTTCTATGGTAGATACTTGGTTGGCAAACCAGCTCTTCCAGA
ATATCTCCTCCCAGACCCAAGTTCTGATTGTCGGCGATGCCGAGCAATTGCCTTCTGTCAGCCCCGGTCAAGTACTTGCT
GACCTCTTGAAAATTGACAAGCTGCCCAGCATTACTCTAGAACGTATCTATCGTCAATCCGATGATTCGACCATTGTTAC
CCTAGCCAGCCAGATTCGACAGGGTGCTCTGCCTAGCGATTTTCGTGAGAAAAAGGCTGACCGTTCCTATTTTGAAGCCC
AGAATGAACAAATTCCAGCCCTGATTGAGCGCATTGTCGGCGCAGCCATCAAGTCAGGTATTCCTGCAAACGAGGTACAG
ATCCTCGCTCCCATGTACCGTGGGGCCGCAGGCATCGACCAACTCAACACTATGACCCAGGCCCTGCTCAATCCACTGGA
AGAGGGAGAGTTAGAATTCCTGCATAACGAGCAAGCCTTCCGCCAAGGCGACCGGGTCATTCATTTAGTCAACGATGCCG
AGGCCAATGTCTTCAATGGTGATTTAGGCTACATCACCGACCTCCTTCCCGCCAAGTACACCGACTCCAAGCAGGACGAA
ATTACCATCAACTTCGACGGTAGCGAGGTCACCTATCCCCGAAACGAATGGTACAAGATTACCCTGGCCTATGCCATGTC
CATCCACAAGTCCCAAGGCAGCGAGTTTCAGGTAGTCATCCTCCCCATCACCCGCACCAGCCACCGTATGCTCCAGCGCA
ATCTGGTCTACACCGCCATCACCCGCTCCAAGAGCAAGCTCATCCTCCTGGGCGAAATCTCCGCCTTCGACTACGCCGTC
AAAAACGCCGGCACCGTCCGAAAAACCTATCTGGTCCCACGTTTCCAAGGGGAAATGGCAGAGCAGGAAAGCAAGGAAAG
CCTGATTAAAAAAGACGAAAGCAAAACAGCTACAACCACGCAAACCCAGCCCCCTACTCAGCCAGACAGAAAAGAACAGG
TTAAAGTAGTCAAAGAAAACAACCAACAACTCTCCCTTCTTGATCAAGACCAGCCAGAAAAAACAAGTCCCCAACCCACA
GAATACATTTTGACTGTAGACAACCTACTAACCATCGACCCCATGATTGGCATAGAACAGGCAGATATTGAAGAATTTTT
TAAAGCATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(663-710)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(575-645)

AAA domain (AAA_30)

(332-529)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

40.891

92.039

0.376