Detailed information NTG1108171

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACNBEW_RS08140
• Genome accession: NZ_CP184280
• Coordinates: 1614814..1615593 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain GHZJ
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1609814..1620593

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNBEW_RS08120 (ACNBEW_08120)	trmFO	1610501..1611808 (+)	1308	WP_012117550.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ACNBEW_RS08125 (ACNBEW_08125)	xerC	1611878..1612795 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
ACNBEW_RS08130 (ACNBEW_08130)	hslV	1612811..1613356 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
ACNBEW_RS08135 (ACNBEW_08135)	hslU	1613373..1614776 (+)	1404	WP_007611413.1	HslU--HslV peptidase ATPase subunit	-
ACNBEW_RS08140 (ACNBEW_08140)	codY	1614814..1615593 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACNBEW_RS08145 (ACNBEW_08145)	flgB	1615947..1616336 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
ACNBEW_RS08150 (ACNBEW_08150)	flgC	1616336..1616788 (+)	453	WP_007409776.1	flagellar basal body rod protein FlgC	-
ACNBEW_RS08155 (ACNBEW_08155)	fliE	1616799..1617119 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
ACNBEW_RS08160 (ACNBEW_08160)	fliF	1617162..1618772 (+)	1611	WP_032874889.1	flagellar basal-body MS-ring/collar protein FliF	-
ACNBEW_RS08165 (ACNBEW_08165)	fliG	1618785..1619801 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ACNBEW_RS08170 (ACNBEW_08170)	fliH	1619794..1620549 (+)	756	WP_032874891.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1108171 ACNBEW_RS08140 WP_003154263.1 1614814..1615593(+) (codY) [Bacillus velezensis strain GHZJ]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1108171 ACNBEW_RS08140 WP_003154263.1 1614814..1615593(+) (codY) [Bacillus velezensis strain GHZJ]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471