Detailed information NTG1107307

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACN9KP_RS08205
• Genome accession: NZ_CP183947
• Coordinates: 1620726..1621505 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain Ya-1 isolate Tropical rainforest soil
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1615726..1626505

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACN9KP_RS08185 (ACN9KP_08185)	trmFO	1616413..1617720 (+)	1308	WP_003154273.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ACN9KP_RS08190 (ACN9KP_08190)	xerC	1617790..1618707 (+)	918	WP_043867088.1	tyrosine recombinase XerC	-
ACN9KP_RS08195 (ACN9KP_08195)	hslV	1618723..1619268 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
ACN9KP_RS08200 (ACN9KP_08200)	hslU	1619285..1620688 (+)	1404	WP_014305002.1	HslU--HslV peptidase ATPase subunit	-
ACN9KP_RS08205 (ACN9KP_08205)	codY	1620726..1621505 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACN9KP_RS08210 (ACN9KP_08210)	flgB	1621859..1622248 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
ACN9KP_RS08215 (ACN9KP_08215)	flgC	1622248..1622700 (+)	453	WP_003154259.1	flagellar basal body rod protein FlgC	-
ACN9KP_RS08220 (ACN9KP_08220)	fliE	1622711..1623031 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
ACN9KP_RS08225 (ACN9KP_08225)	fliF	1623074..1624684 (+)	1611	WP_003154257.1	flagellar basal-body MS-ring/collar protein FliF	-
ACN9KP_RS08230 (ACN9KP_08230)	fliG	1624697..1625713 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ACN9KP_RS08235 (ACN9KP_08235)	fliH	1625706..1626461 (+)	756	WP_003154255.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1107307 ACN9KP_RS08205 WP_003154263.1 1620726..1621505(+) (codY) [Bacillus velezensis strain Ya-1 isolate Tropical rainforest soil]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1107307 ACN9KP_RS08205 WP_003154263.1 1620726..1621505(+) (codY) [Bacillus velezensis strain Ya-1 isolate Tropical rainforest soil]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471