Detailed information NTG1107233

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACM5XX_RS08605
• Genome accession: NZ_CP183946
• Coordinates: 1670597..1671376 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain HKSSLJEBR3
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1665597..1676376

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACM5XX_RS08585 (ACM5XX_08585)	trmFO	1666284..1667591 (+)	1308	WP_003154273.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ACM5XX_RS08590 (ACM5XX_08590)	xerC	1667661..1668578 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
ACM5XX_RS08595 (ACM5XX_08595)	hslV	1668594..1669139 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
ACM5XX_RS08600 (ACM5XX_08600)	hslU	1669156..1670559 (+)	1404	WP_014305002.1	HslU--HslV peptidase ATPase subunit	-
ACM5XX_RS08605 (ACM5XX_08605)	codY	1670597..1671376 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACM5XX_RS08610 (ACM5XX_08610)	flgB	1671730..1672119 (+)	390	WP_095318220.1	flagellar basal body rod protein FlgB	-
ACM5XX_RS08615 (ACM5XX_08615)	flgC	1672119..1672571 (+)	453	WP_003154259.1	flagellar basal body rod protein FlgC	-
ACM5XX_RS08620 (ACM5XX_08620)	fliE	1672582..1672902 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
ACM5XX_RS08625 (ACM5XX_08625)	fliF	1672945..1674555 (+)	1611	WP_003154257.1	flagellar basal-body MS-ring/collar protein FliF	-
ACM5XX_RS08630 (ACM5XX_08630)	fliG	1674568..1675584 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ACM5XX_RS08635 (ACM5XX_08635)	fliH	1675577..1676332 (+)	756	WP_032856803.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1107233 ACM5XX_RS08605 WP_003154263.1 1670597..1671376(+) (codY) [Bacillus velezensis strain HKSSLJEBR3]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1107233 ACM5XX_RS08605 WP_003154263.1 1670597..1671376(+) (codY) [Bacillus velezensis strain HKSSLJEBR3]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCTCTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471