Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   ACLKM1_RS07885 Genome accession   NZ_CP183903
Coordinates   1689327..1689962 (-) Length   211 a.a.
NCBI ID   WP_005170411.1    Uniprot ID   -
Organism   Acinetobacter pseudolwoffii strain M5_NDM     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1684327..1694962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM1_RS07855 - 1684708..1685139 (-) 432 WP_005097315.1 SRPBCC family protein -
  ACLKM1_RS07860 tadA 1685195..1685710 (-) 516 WP_100358124.1 tRNA adenosine(34) deaminase TadA -
  ACLKM1_RS07865 - 1685718..1686839 (-) 1122 WP_005097318.1 enoyl-CoA hydratase/isomerase family protein -
  ACLKM1_RS07870 ung 1686836..1687549 (-) 714 WP_005097319.1 uracil-DNA glycosylase -
  ACLKM1_RS07875 - 1687596..1688192 (-) 597 WP_005097321.1 6-pyruvoyl trahydropterin synthase family protein -
  ACLKM1_RS07880 gspK 1688346..1689314 (-) 969 WP_005097322.1 type II secretion system minor pseudopilin GspK -
  ACLKM1_RS07885 xcpW 1689327..1689962 (-) 636 WP_005170411.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ACLKM1_RS07890 xcpV 1689959..1690405 (-) 447 WP_074383542.1 type II secretion system minor pseudopilin GspI Machinery gene
  ACLKM1_RS07895 - 1690467..1691018 (-) 552 WP_074383251.1 type II secretion system protein -
  ACLKM1_RS07900 - 1691033..1691647 (-) 615 WP_411689508.1 TetR/AcrR family transcriptional regulator -
  ACLKM1_RS07905 - 1691688..1692461 (-) 774 WP_074383252.1 TatD family hydrolase -
  ACLKM1_RS07910 - 1692489..1692830 (-) 342 WP_005170399.1 PilZ domain-containing protein -
  ACLKM1_RS07915 - 1692846..1693826 (-) 981 WP_179999363.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  ACLKM1_RS07920 kdsB 1693841..1694602 (-) 762 WP_180076189.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24097.29 Da        Isoelectric Point: 4.6378

>NTDB_id=1107086 ACLKM1_RS07885 WP_005170411.1 1689327..1689962(-) (xcpW) [Acinetobacter pseudolwoffii strain M5_NDM]
MKPKGFTLVELLVAIAIFAVLSALGWKVFDYIVKTKDQNAVHEQRLGQLQETYQQILRDTVQAVPLTANINSDIQPALVL
QNGRFNFSKTGVTDPLEEGISPDERIEYQYRADEQKLYRLKYRNLNQTGRDQPESSILLSDVEQFQVVVLNPNELTQWPD
SSMDLNQLEQKQRLPKGIKINLTVNGVSYEWLFSLLNTDFLLDNQNTGQPG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1107086 ACLKM1_RS07885 WP_005170411.1 1689327..1689962(-) (xcpW) [Acinetobacter pseudolwoffii strain M5_NDM]
ATGAAGCCTAAAGGATTTACCCTGGTCGAATTATTGGTTGCCATTGCAATCTTTGCGGTACTGTCTGCTTTGGGCTGGAA
AGTTTTTGATTATATTGTCAAAACCAAAGATCAAAATGCAGTACATGAACAGCGTCTAGGTCAGCTACAGGAAACCTATC
AGCAAATTTTACGGGATACGGTACAGGCAGTCCCTTTAACGGCCAATATCAATAGTGATATTCAACCGGCTCTGGTTTTG
CAAAATGGCCGTTTTAATTTTAGTAAAACTGGCGTGACTGATCCTCTGGAGGAGGGTATTTCGCCAGATGAACGCATTGA
ATATCAGTATCGGGCCGATGAACAAAAACTGTATCGACTGAAATATCGCAACCTGAATCAGACCGGTCGTGATCAACCTG
AATCCAGTATTTTATTATCGGACGTTGAGCAATTTCAGGTTGTGGTGCTGAATCCAAATGAACTCACACAGTGGCCTGAT
TCTTCTATGGATTTAAATCAGCTAGAGCAGAAACAGCGCTTGCCCAAAGGCATTAAAATCAATTTAACCGTGAATGGCGT
CAGCTATGAGTGGCTGTTTAGTTTATTAAATACGGACTTTTTGCTTGATAATCAGAATACAGGTCAACCCGGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-24)

Type II secretion system (T2SS), protein J (T2SSJ)

(58-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

58.333

96.682

0.564

Multiple sequence alignment