Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   ACN6MT_RS12395 Genome accession   NZ_CP183883
Coordinates   2579365..2581776 (+) Length   803 a.a.
NCBI ID   WP_419956078.1    Uniprot ID   -
Organism   Neobacillus niacini strain BE6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2574365..2586776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6MT_RS12375 (ACN6MT_12375) cymR 2575631..2576050 (+) 420 WP_063251393.1 cysteine metabolism transcriptional regulator CymR -
  ACN6MT_RS12380 (ACN6MT_12380) - 2576095..2577237 (+) 1143 WP_419956075.1 cysteine desulfurase family protein -
  ACN6MT_RS12385 (ACN6MT_12385) mnmA 2577272..2578390 (+) 1119 WP_419956076.1 tRNA 2-thiouridine(34) synthase MnmA -
  ACN6MT_RS12390 (ACN6MT_12390) - 2578485..2579138 (+) 654 WP_419956077.1 tetratricopeptide repeat protein -
  ACN6MT_RS12395 (ACN6MT_12395) recD2 2579365..2581776 (+) 2412 WP_419956078.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ACN6MT_RS12400 (ACN6MT_12400) - 2581870..2582481 (-) 612 WP_419956079.1 DedA family protein -
  ACN6MT_RS12405 (ACN6MT_12405) - 2582853..2583296 (+) 444 WP_419956080.1 PRC-barrel domain-containing protein -
  ACN6MT_RS12410 (ACN6MT_12410) - 2583309..2583500 (+) 192 WP_063251388.1 hypothetical protein -
  ACN6MT_RS12415 (ACN6MT_12415) - 2583578..2583712 (+) 135 WP_082799354.1 YrzQ family protein -
  ACN6MT_RS12420 (ACN6MT_12420) - 2583805..2584884 (+) 1080 WP_419956081.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 803 a.a.        Molecular weight: 90955.94 Da        Isoelectric Point: 5.0876

>NTDB_id=1106712 ACN6MT_RS12395 WP_419956078.1 2579365..2581776(+) (recD2) [Neobacillus niacini strain BE6]
MDKQSSLDLFAEQGKFVKGKHLVTIFHNEQNLYTVLRIRVEETNHEYDDKEAVITGYFPKIHEQETYIFFGEFKDHPKFG
MQFQTKHFRKDIPQTKQGVAAYLSSEMFKGIGKKTAENIVETLGENAISKILNQPSLLDSVPKLPPDKAKMLYDTLMEHQ
GLEQVMVALNQYGFGPQLSMRMYQTYKEHTLDIIQKNPYKLVEDIEGIGFGRADELGYQLGISGNHPDRIKAACLYSLES
ESMQTGHVYVHAEDLLIQVKNLLEENKRDQIEYTDISTEILKLEEEGKIIGEEKRVYVPSLYYAEKGLVTSIKKILEQTE
YKEQFPESEFLLALGNLEERLNVQYAPTQREAIQTALMSPMLILTGGPGTGKTTVIKGIVELYAELHGCSLDPKDYHKKG
EPFPFLLAAPTGRAAKRMSESTGLPAVTIHRLLGLNGTEGYDHEEASPLEGKILIVDETSMLDIWLANQLFKALPDHIQV
ILVGDEDQLPSVGPGQVLKDLLRSEVVPTVRLTDIYRQAEGSSIIELAHDIKKGYLPANVAMKQPDRSFIRCSTAQIPQV
IEKVALNAKSKGYSAKDIQVLAPMYRGPAGIDRLNVLLQEIFNPNPGGSRKELAFGDVKYRIGDKVLQLVNQPESNVFNG
DIGEIISIIYAKENTEKQDMVYISFEGNEIEYTRQDLNQITHAYCCSVHKSQGSEFPIVILPITRSYYRMLRRNLIYTAI
TRSKQSLILCGEEDALRMGVERADELSRQTTLWQKLQEMVSVKKANDEREDEPEDEQTLSAEEKLMQVNPMIGMEYVTPY
DFM

Nucleotide


Download         Length: 2412 bp        

>NTDB_id=1106712 ACN6MT_RS12395 WP_419956078.1 2579365..2581776(+) (recD2) [Neobacillus niacini strain BE6]
GTGGATAAGCAAAGCTCGCTTGATTTATTTGCTGAGCAAGGGAAGTTTGTAAAAGGAAAACACCTTGTTACGATTTTTCA
TAATGAGCAAAATCTTTACACGGTTTTAAGAATACGTGTCGAAGAAACGAATCATGAATATGACGACAAAGAAGCCGTGA
TCACAGGCTATTTTCCAAAAATACACGAGCAGGAAACCTATATCTTTTTTGGTGAGTTTAAGGATCATCCGAAGTTTGGC
ATGCAATTCCAAACCAAACACTTTCGAAAGGACATTCCTCAAACCAAGCAAGGTGTAGCAGCTTATTTATCAAGTGAAAT
GTTTAAAGGGATTGGGAAGAAAACAGCAGAAAACATAGTAGAAACATTAGGGGAAAATGCGATTTCAAAAATTTTGAATC
AGCCCTCCTTACTTGATTCTGTCCCAAAGCTTCCTCCCGATAAAGCAAAAATGCTCTATGATACCTTGATGGAACACCAG
GGTCTTGAGCAAGTAATGGTCGCTTTAAACCAATATGGTTTTGGACCACAGCTTTCAATGAGAATGTATCAAACATATAA
AGAGCATACTCTGGATATTATCCAAAAGAACCCCTATAAACTTGTAGAAGACATTGAGGGGATTGGGTTTGGCCGGGCAG
ACGAACTTGGTTATCAACTAGGAATATCCGGGAATCACCCAGACCGGATAAAAGCGGCCTGCCTTTATTCACTCGAGAGC
GAGAGTATGCAGACAGGGCATGTATATGTTCATGCAGAGGATCTATTGATACAGGTTAAAAATCTACTAGAAGAAAATAA
ACGCGATCAAATTGAATACACCGACATTTCAACAGAAATATTGAAACTTGAAGAAGAGGGGAAAATAATTGGTGAGGAAA
AGCGCGTTTATGTGCCTTCTTTGTATTACGCTGAAAAAGGGTTAGTAACAAGTATTAAAAAAATCCTTGAACAAACGGAA
TATAAGGAGCAATTTCCTGAATCTGAATTTTTACTGGCGTTAGGGAATCTTGAAGAAAGACTAAACGTACAATATGCCCC
AACCCAAAGGGAAGCAATACAAACAGCGTTAATGTCTCCAATGCTGATTCTAACAGGAGGTCCTGGAACAGGTAAAACAA
CTGTTATTAAAGGGATTGTTGAGCTTTATGCAGAATTACATGGCTGCTCACTAGATCCTAAGGATTATCATAAAAAGGGA
GAGCCCTTCCCGTTTTTGCTTGCTGCCCCTACAGGAAGAGCGGCAAAAAGGATGAGTGAATCAACCGGACTGCCTGCTGT
AACGATTCACCGCTTACTAGGATTAAATGGCACAGAAGGGTATGATCATGAGGAGGCTAGTCCTCTTGAAGGGAAGATTC
TTATCGTTGATGAGACATCGATGCTCGATATTTGGTTAGCAAATCAATTGTTTAAAGCACTCCCAGATCATATTCAAGTT
ATTCTCGTCGGTGATGAAGATCAGCTTCCGTCGGTTGGGCCAGGACAAGTGCTAAAAGATTTATTAAGATCAGAGGTTGT
CCCCACAGTAAGATTAACGGATATTTATCGACAAGCGGAAGGTTCTTCGATTATTGAATTGGCACATGATATTAAAAAGG
GATATTTGCCAGCGAATGTCGCTATGAAACAGCCAGACCGTTCTTTTATTAGATGTTCAACTGCACAAATTCCACAGGTA
ATCGAAAAGGTTGCCTTAAATGCAAAAAGCAAAGGGTATTCAGCAAAAGATATTCAAGTTTTAGCCCCAATGTACAGAGG
TCCGGCCGGGATTGATCGCTTAAATGTATTACTACAAGAAATTTTTAATCCGAACCCTGGCGGATCACGGAAGGAACTTG
CATTTGGTGATGTCAAATATCGTATTGGTGATAAAGTACTTCAGTTAGTAAATCAGCCGGAAAGCAATGTTTTTAACGGA
GATATAGGGGAAATCATTTCCATTATCTATGCAAAGGAAAATACAGAAAAACAAGACATGGTGTACATTTCCTTTGAAGG
GAATGAGATTGAATATACCAGGCAGGACTTAAACCAAATTACCCATGCTTATTGCTGTTCTGTACATAAGTCTCAGGGAA
GTGAATTCCCAATTGTCATACTGCCAATTACGAGAAGCTATTATCGGATGTTACGAAGAAATCTCATTTATACGGCCATT
ACCAGGAGTAAACAATCGCTAATCCTATGCGGTGAAGAAGACGCACTGCGGATGGGGGTCGAGCGGGCTGATGAACTAAG
CCGTCAAACGACTTTATGGCAAAAGCTTCAGGAAATGGTTTCAGTAAAGAAAGCAAATGACGAACGGGAAGACGAACCGG
AAGATGAACAGACATTATCTGCTGAAGAAAAATTAATGCAGGTGAATCCAATGATTGGAATGGAATACGTTACACCTTAT
GATTTTATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(345-553)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-663)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.469

98.879

0.618

Multiple sequence alignment