Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ACN6MT_RS12310 Genome accession   NZ_CP183883
Coordinates   2559081..2561435 (+) Length   784 a.a.
NCBI ID   WP_419956067.1    Uniprot ID   -
Organism   Neobacillus niacini strain BE6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2554081..2566435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6MT_RS12295 (ACN6MT_12295) spoVB 2554627..2556177 (-) 1551 WP_034672626.1 stage V sporulation protein B -
  ACN6MT_RS12300 (ACN6MT_12300) - 2556305..2556601 (+) 297 WP_034672623.1 post-transcriptional regulator -
  ACN6MT_RS12305 (ACN6MT_12305) secDF 2556724..2558988 (+) 2265 WP_419956066.1 protein translocase subunit SecDF -
  ACN6MT_RS12310 (ACN6MT_12310) recJ 2559081..2561435 (+) 2355 WP_419956067.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ACN6MT_RS12315 (ACN6MT_12315) - 2561435..2561947 (+) 513 WP_034672617.1 adenine phosphoribosyltransferase -
  ACN6MT_RS12320 (ACN6MT_12320) - 2562295..2564490 (+) 2196 WP_034672615.1 RelA/SpoT family protein -
  ACN6MT_RS12325 (ACN6MT_12325) dtd 2564505..2564948 (+) 444 WP_419956068.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 87818.53 Da        Isoelectric Point: 5.3284

>NTDB_id=1106711 ACN6MT_RS12310 WP_419956067.1 2559081..2561435(+) (recJ) [Neobacillus niacini strain BE6]
MLKSKTRWVVRKSDQQLVKTLENELKITPLVASLLINRGLDTVDSARYFLFGKEQFHDPFLLKGMDIAVERIREAIEKQE
PILIFGDYDADGVSSTTVLMLTLRDLGANVQFYIPNRFTEGYGPNEPAFRRAAENGVKLIITVDTGISAINEAAIAKELG
LDLIITDHHEPGPVLPEALAIIHPKLPDSIYPFRELAGVGVAFKLAHALYGEVPEHLLEIAVIGTIADLVSLKDENRLIA
KKGLEKLKVTKNKGLKAILKVAGVDLQSINEETIGFSLAPRINAVGRLESADMAVELLLTDDSYEAEALAQEMDELNKTR
QSIVNSITLEAIEEVERNYPIDSNSVLVIGKEGWNAGVIGIVASRLVEKFYRPTIVLSFDKEKGLAKGSARSIAGFDLFK
NLSECRDILPHFGGHPMAAGMTLKLADVSDLRQRLNNLANEQLTEDDFIPITTLDHEIQVEEINLSSLDELNLLAPFGMD
NPKPKVLISNVEISTMRKIGSEQNHLKVMVNRNGTNLDGIGFGLGPLFDHISPASKISLIGELAVNEWNNNRKPQIFIQD
VSVESWQLFDHRGVKRIHSMVTTIPNEKRKYIIFNRDQIEKMDPAVTSEVILIENEADAKAFDSHQANVVLVDLPPSKDL
LHHLFNGKRPARIYAFFDKENSDFFSTIPTRDHFKWFYAFLLKKGPIDLGRYGDEIAKHRGWSTETITFMSKVFSELDFV
TINNGFITLNQQSQKRDLTDSVTYQTKQAQFALERDLLFSSFQQLKSWFDQVIEESVTTRGGIT

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=1106711 ACN6MT_RS12310 WP_419956067.1 2559081..2561435(+) (recJ) [Neobacillus niacini strain BE6]
ATGTTAAAGTCGAAAACTAGATGGGTTGTTCGTAAATCTGATCAACAACTAGTAAAAACTCTCGAAAACGAATTGAAAAT
TACGCCACTTGTTGCGTCGCTGCTTATCAACCGCGGATTAGATACCGTTGATTCTGCACGGTATTTTTTATTTGGAAAAG
AGCAATTTCATGATCCCTTTTTGTTAAAAGGTATGGATATCGCTGTAGAAAGAATTCGGGAAGCTATTGAAAAGCAAGAA
CCAATATTAATATTTGGGGATTATGATGCGGATGGTGTAAGCAGTACAACGGTATTAATGCTTACTCTTCGGGATTTAGG
TGCGAATGTCCAATTTTATATTCCTAATCGTTTTACTGAAGGATACGGTCCGAACGAACCGGCCTTTCGCCGAGCAGCTG
AAAATGGAGTCAAGTTAATAATTACTGTAGATACAGGCATATCCGCCATAAACGAAGCAGCAATTGCAAAAGAACTCGGT
CTCGATTTAATCATTACCGATCATCATGAGCCGGGTCCCGTATTACCTGAAGCACTGGCAATTATTCATCCTAAATTGCC
TGATAGTATTTACCCATTTCGTGAACTCGCAGGGGTAGGGGTGGCCTTTAAATTAGCCCATGCATTGTACGGAGAAGTTC
CAGAGCACTTGTTAGAAATTGCCGTTATTGGTACCATTGCCGATTTAGTTTCGTTAAAAGATGAAAATCGCCTCATTGCA
AAAAAAGGTTTGGAAAAACTTAAAGTCACCAAGAATAAAGGTCTAAAAGCAATTTTAAAAGTAGCGGGTGTAGACCTACA
AAGCATTAACGAGGAAACAATAGGTTTTTCACTGGCACCAAGAATCAATGCAGTCGGAAGATTGGAAAGTGCAGATATGG
CTGTCGAGCTTTTGCTTACCGATGATTCATACGAAGCAGAGGCTCTAGCACAAGAAATGGATGAATTAAACAAGACAAGA
CAGTCTATTGTGAACTCCATAACACTTGAAGCCATTGAAGAGGTTGAAAGAAATTATCCTATAGATTCAAATTCAGTACT
CGTCATCGGAAAAGAAGGCTGGAATGCAGGTGTGATTGGCATCGTAGCTTCAAGATTAGTAGAAAAGTTTTACCGGCCGA
CAATCGTTCTTAGCTTTGACAAAGAAAAGGGATTAGCAAAAGGCTCTGCACGAAGTATAGCTGGTTTTGATTTGTTTAAA
AATCTTTCGGAATGCCGGGATATTCTACCCCATTTTGGCGGCCATCCTATGGCAGCTGGAATGACATTAAAGCTAGCTGA
TGTTTCTGACCTGCGTCAAAGATTAAATAATCTAGCAAATGAGCAGTTAACAGAGGATGATTTTATCCCAATTACCACGC
TGGACCATGAAATTCAGGTGGAAGAAATTAATTTATCTTCGCTCGATGAATTAAATCTCCTTGCTCCTTTTGGAATGGAC
AATCCTAAGCCTAAGGTGTTAATCAGTAATGTGGAAATATCGACAATGAGAAAGATTGGGTCAGAACAAAATCACTTGAA
GGTTATGGTTAATCGAAATGGTACAAATTTAGATGGAATTGGATTTGGACTCGGACCGTTATTTGACCATATTTCACCAG
CCTCAAAAATTTCATTAATTGGTGAATTAGCCGTCAATGAGTGGAATAATAACCGTAAACCACAAATTTTTATCCAAGAT
GTTTCGGTTGAATCGTGGCAATTATTTGATCATCGCGGGGTAAAACGGATCCACTCAATGGTTACTACAATACCTAATGA
AAAGCGTAAATATATTATTTTTAACAGAGACCAGATTGAAAAAATGGACCCTGCTGTTACGAGTGAGGTTATACTCATTG
AAAATGAAGCAGATGCTAAGGCATTCGATTCTCATCAGGCCAATGTGGTACTCGTTGACCTGCCGCCGTCAAAGGACCTG
CTGCATCATTTATTCAATGGGAAACGTCCTGCTCGAATTTATGCGTTTTTCGATAAAGAAAATAGCGATTTCTTTAGTAC
GATTCCTACAAGGGATCACTTTAAATGGTTTTATGCATTTTTGTTAAAAAAAGGTCCGATAGATTTGGGTCGTTATGGGG
ATGAAATCGCTAAGCACCGCGGCTGGTCAACGGAAACGATAACGTTTATGTCAAAAGTGTTTTCTGAACTAGATTTTGTT
ACAATAAACAATGGATTTATTACTTTGAATCAACAATCACAAAAGCGTGACCTTACTGATTCCGTTACCTACCAAACCAA
ACAGGCTCAGTTTGCACTTGAAAGAGATTTATTATTTTCATCCTTTCAACAATTGAAGAGCTGGTTTGACCAGGTTATAG
AAGAATCAGTTACTACCCGAGGAGGCATTACGTAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(455-560)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(567-769)

DHHA1 domain (DHHA1)

(312-437)

DHH family (DHH)

(82-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

56.113

99.107

0.556

Multiple sequence alignment