Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | ACGHCW_RS01580 | Genome accession | NZ_AP031614 |
| Coordinates | 335883..336458 (+) | Length | 191 a.a. |
| NCBI ID | WP_005451499.1 | Uniprot ID | A0A9X3MLM3 |
| Organism | Vibrio harveyi strain TUMSAT-2019 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 330883..341458
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACGHCW_RS01565 (VHTUMSATKI_02660) | oxyR | 331159..332067 (+) | 909 | WP_005451495.1 | DNA-binding transcriptional regulator OxyR | - |
| ACGHCW_RS01570 (VHTUMSATKI_02670) | - | 332134..334704 (-) | 2571 | WP_050902270.1 | penicillin-binding protein 1A | - |
| ACGHCW_RS01575 (VHTUMSATKI_02680) | pilM | 334883..335899 (+) | 1017 | WP_026000383.1 | type IV pilus assembly protein PilM | Machinery gene |
| ACGHCW_RS01580 (VHTUMSATKI_02690) | pilN | 335883..336458 (+) | 576 | WP_005451499.1 | PilN domain-containing protein | Machinery gene |
| ACGHCW_RS01585 (VHTUMSATKI_02700) | pilO | 336451..337044 (+) | 594 | WP_005451500.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| ACGHCW_RS01590 (VHTUMSATKI_02710) | pilP | 337034..337549 (+) | 516 | WP_005451501.1 | pilus assembly protein PilP | Machinery gene |
| ACGHCW_RS01595 (VHTUMSATKI_02720) | pilQ | 337584..339335 (+) | 1752 | WP_005451505.1 | type IV pilus secretin PilQ | Machinery gene |
| ACGHCW_RS01600 (VHTUMSATKI_02730) | aroK | 339525..340043 (+) | 519 | WP_005451507.1 | shikimate kinase AroK | - |
| ACGHCW_RS01605 (VHTUMSATKI_02740) | aroB | 340075..341175 (+) | 1101 | WP_038898114.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 22244.63 Da Isoelectric Point: 9.1586
>NTDB_id=110650 ACGHCW_RS01580 WP_005451499.1 335883..336458(+) (pilN) [Vibrio harveyi strain TUMSAT-2019]
MLYHINLLAWRENQREEHRRRFLSLIVLGVIVALGVQWGIGKFYQYQQDQQQQRLDYLAHYISQLDKRIEAMKIAEQEHS
KILERLKIVEGLQNGRNKTTEFMNLMPSVIPEGVYVDKIKMNDYEIEISGISDSTPRLATMLDNMERSAKLLDVDMHSIV
HGKARFGKEFQTFKVSFMFKDASVKGGNQHG
MLYHINLLAWRENQREEHRRRFLSLIVLGVIVALGVQWGIGKFYQYQQDQQQQRLDYLAHYISQLDKRIEAMKIAEQEHS
KILERLKIVEGLQNGRNKTTEFMNLMPSVIPEGVYVDKIKMNDYEIEISGISDSTPRLATMLDNMERSAKLLDVDMHSIV
HGKARFGKEFQTFKVSFMFKDASVKGGNQHG
Nucleotide
Download Length: 576 bp
>NTDB_id=110650 ACGHCW_RS01580 WP_005451499.1 335883..336458(+) (pilN) [Vibrio harveyi strain TUMSAT-2019]
ATGCTGTATCACATTAACCTCCTTGCGTGGCGTGAGAATCAACGTGAAGAACACCGCCGCCGCTTTCTCAGTTTGATCGT
CTTGGGGGTGATTGTTGCGTTGGGCGTGCAATGGGGCATTGGTAAGTTCTATCAATATCAGCAGGATCAACAACAGCAGC
GCCTTGATTATTTGGCGCACTATATCTCCCAGCTTGATAAACGAATCGAAGCGATGAAGATTGCTGAACAAGAGCACAGC
AAGATCTTGGAGAGGTTAAAGATCGTTGAAGGTTTGCAAAATGGGCGTAATAAGACCACGGAGTTCATGAACCTGATGCC
GTCGGTGATCCCTGAAGGAGTCTACGTCGATAAGATCAAAATGAATGATTATGAAATTGAAATCTCGGGTATCTCTGATA
GTACACCTCGCTTGGCCACCATGCTCGACAACATGGAGCGTTCAGCCAAGCTGCTAGATGTCGACATGCATTCTATCGTT
CATGGTAAAGCGCGTTTTGGGAAAGAGTTTCAGACTTTCAAAGTTTCCTTCATGTTCAAAGACGCCTCGGTGAAAGGAGG
TAACCAACATGGTTAA
ATGCTGTATCACATTAACCTCCTTGCGTGGCGTGAGAATCAACGTGAAGAACACCGCCGCCGCTTTCTCAGTTTGATCGT
CTTGGGGGTGATTGTTGCGTTGGGCGTGCAATGGGGCATTGGTAAGTTCTATCAATATCAGCAGGATCAACAACAGCAGC
GCCTTGATTATTTGGCGCACTATATCTCCCAGCTTGATAAACGAATCGAAGCGATGAAGATTGCTGAACAAGAGCACAGC
AAGATCTTGGAGAGGTTAAAGATCGTTGAAGGTTTGCAAAATGGGCGTAATAAGACCACGGAGTTCATGAACCTGATGCC
GTCGGTGATCCCTGAAGGAGTCTACGTCGATAAGATCAAAATGAATGATTATGAAATTGAAATCTCGGGTATCTCTGATA
GTACACCTCGCTTGGCCACCATGCTCGACAACATGGAGCGTTCAGCCAAGCTGCTAGATGTCGACATGCATTCTATCGTT
CATGGTAAAGCGCGTTTTGGGAAAGAGTTTCAGACTTTCAAAGTTTCCTTCATGTTCAAAGACGCCTCGGTGAAAGGAGG
TAACCAACATGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
94.241 |
100 |
0.942 |
| pilN | Vibrio cholerae strain A1552 |
60.452 |
92.67 |
0.56 |