Detailed information NTG1106414

Bioinformatically predicted

Overview

• Name: comF
• Type: Machinery gene
• Locus tag: ABJ974_RS03555
• Genome accession: NZ_CP183840
• Coordinates: 818197..818850 (-)
• Length: 217 a.a.
• NCBI ID: WP_419870013.1
• Uniprot ID: -
• Organism: Chryseobacterium sp. SW-1
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 813197..823850

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABJ974_RS03545	der	816160..817470 (+)	1311	WP_419870011.1	ribosome biogenesis GTPase Der	-
ABJ974_RS03550	upp	817540..818190 (+)	651	WP_419870012.1	uracil phosphoribosyltransferase	-
ABJ974_RS03555	comF	818197..818850 (-)	654	WP_419870013.1	ComF family protein	Machinery gene
ABJ974_RS03560	-	818873..820348 (-)	1476	WP_419870014.1	helix-turn-helix domain-containing protein	-
ABJ974_RS03565	aceB	820475..822049 (+)	1575	WP_419870015.1	malate synthase A	-
ABJ974_RS03570	aceA	822091..823371 (+)	1281	WP_419870016.1	isocitrate lyase	-

Sequence

Protein

• Length: 217 a.a.
• Molecular weight: 25326.33 Da
• Isoelectric Point: 7.7804

>NTDB_id=1106414 ABJ974_RS03555 WP_419870013.1 818197..818850(-) (comF) [Chryseobacterium sp. SW-1]
MILDILFPNRCIHCNRIIDDEPVICSLCFSQIHFTHFQYSKPNILSEKCSLLFPVENAYSLIHFEETGVSRKLIHELKYK
SREKIGKILAEWTTERLDFNLEKPDIMISVPLHPKKLRERGYNQLHLFTETLSEFYQIPFDHDALKRNHYSKAQALKNKE
LRLETQNTFSVTKDISGKHILLTDDVFTTGNTLASISWELLRKGNNKVSVLVMAMDM

Nucleotide

• Length: 654 bp

>NTDB_id=1106414 ABJ974_RS03555 WP_419870013.1 818197..818850(-) (comF) [Chryseobacterium sp. SW-1]
ATGATACTTGACATTTTATTCCCCAACCGCTGCATACACTGCAACCGGATTATCGACGACGAACCGGTAATTTGCAGCCT
TTGCTTTTCTCAAATTCATTTTACTCATTTCCAATATTCCAAGCCTAACATTTTGAGTGAAAAATGCAGTCTTCTGTTTC
CTGTTGAAAATGCTTATTCTTTAATACATTTTGAGGAAACAGGTGTAAGCCGGAAATTGATTCATGAGCTTAAATATAAA
AGCAGAGAAAAAATCGGAAAAATTTTAGCTGAATGGACCACGGAACGTTTAGATTTCAACCTGGAAAAACCTGATATCAT
GATAAGTGTCCCCCTTCATCCTAAAAAATTAAGGGAGAGAGGTTACAACCAGCTGCATTTATTTACAGAAACGTTATCTG
AGTTTTACCAGATCCCTTTTGACCATGATGCTTTAAAGAGAAATCATTACTCCAAAGCACAGGCCCTGAAAAATAAAGAG
CTCCGCCTGGAAACCCAAAATACTTTTTCCGTAACCAAAGATATTTCCGGAAAGCATATTCTTTTAACCGATGATGTCTT
TACCACCGGAAATACTTTAGCATCCATTTCATGGGAACTGCTTAGGAAAGGAAATAATAAGGTAAGCGTCCTGGTAATGG
CAATGGATATGTAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (2-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comF	Riemerella anatipestifer ATCC 11845 = DSM 15868	51.852	99.539	0.516