Detailed information NTG1106328

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: ACN5ZK_RS11835
• Genome accession: NZ_CP183824
• Coordinates: 2214955..2217375 (-)
• Length: 806 a.a.
• NCBI ID: WP_419743680.1
• Uniprot ID: -
• Organism: Macrococcoides bohemicum strain HLJ23
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2209955..2222375

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACN5ZK_RS11815 (ACN5ZK_11815)	-	2210993..2211322 (-)	330	WP_096076290.1	DUF1292 domain-containing protein	-
ACN5ZK_RS11820 (ACN5ZK_11820)	ruvX	2211337..2211756 (-)	420	WP_096076289.1	Holliday junction resolvase RuvX	-
ACN5ZK_RS11825 (ACN5ZK_11825)	-	2211749..2212018 (-)	270	WP_096076288.1	IreB family regulatory phosphoprotein	-
ACN5ZK_RS11830 (ACN5ZK_11830)	alaS	2212080..2214704 (-)	2625	WP_419743679.1	alanine--tRNA ligase	-
ACN5ZK_RS11835 (ACN5ZK_11835)	recD2	2214955..2217375 (-)	2421	WP_419743680.1	ATP-dependent RecD-like DNA helicase	Machinery gene
ACN5ZK_RS11840 (ACN5ZK_11840)	-	2217378..2218037 (-)	660	WP_096076285.1	tetratricopeptide repeat protein	-
ACN5ZK_RS11845 (ACN5ZK_11845)	mnmA	2218116..2219234 (-)	1119	WP_096076284.1	tRNA 2-thiouridine(34) synthase MnmA	-
ACN5ZK_RS11850 (ACN5ZK_11850)	-	2219241..2220380 (-)	1140	WP_133353364.1	cysteine desulfurase family protein	-
ACN5ZK_RS11855 (ACN5ZK_11855)	-	2220713..2221714 (+)	1002	WP_096076282.1	LLM class flavin-dependent oxidoreductase	-
ACN5ZK_RS11860 (ACN5ZK_11860)	cymR	2221750..2222169 (-)	420	WP_096076281.1	cysteine metabolism transcriptional regulator CymR	-

Sequence

Protein

• Length: 806 a.a.
• Molecular weight: 91436.09 Da
• Isoelectric Point: 4.5668

>NTDB_id=1106328 ACN5ZK_RS11835 WP_419743680.1 2214955..2217375(-) (recD2) [Macrococcoides bohemicum strain HLJ23]
MENATLFDQSYVKGTIIRILFQNNDNFYTVLKAEVIDTNEDFDDEVTVTGFLPQIAEGDTYTFTGKIMLHAKYGKQLQAE
KFEKDLPQSKDGIIHYLSSDLFKGVGKKTARTIVEILGEDALNIILDDKSSLDQIPKLSQDKKDLIYNTINENQAIEKVM
IQLNDWGFGPQLAMKIYQFYKDDTIRVINESPYQLVMDIEGIGFNKADELARHIGIDNNHPERLKAALVYGMEQASLQNG
HTYIPDQILLETSFNLLTKNGSEVNPDALVDALTELCEEKKLLVEHEKNIYIPSLFYSETKTVQILHRLMNHQDQLKQFE
QSEIMLAIGEIEQLFEVSYAEKQKDALMQAMHSKLMILSGGPGTGKTTVVRGIVTLYAELHGLSLDYNDYDGQDFPVVVA
APTGRASKRLYESTGLEATTIHRLIGWTRDNKPDDILENEITAKLIIIDEMSMVDTWLMFQLMKAVPNDAQIIFVGDQDQ
LPSVGPGQVFKDLIESQIIPQIELNEVYRQQEGSSIVELAHQIKRNEPFDITKRYSDRSFIPCQTDQIPEVIEKIVTSAV
NKGYDMRDIQVLAPIYRGNAGIRALNKVLQKILNPPEDKKREMEFGDVVFRNHDKVLQLVNRPEDGVFNGDIGEIVGIFK
AAENALNKDVVIVDYDGNEVTYTKADLIEITHAYCCSIHKAQGSEFPIVIMPVVNQYYRMLQKNILYTGLTRAKQSLIFC
GDVNAFNDGIKRLGNARFTSFYQFLVDYFSTDDQKDIVKRDANAHEIIHDEGLNSLPIQVGEMTEENMYLISPMINMGDI
SPYDYV

Nucleotide

• Length: 2421 bp

>NTDB_id=1106328 ACN5ZK_RS11835 WP_419743680.1 2214955..2217375(-) (recD2) [Macrococcoides bohemicum strain HLJ23]
TTGGAGAACGCCACTTTATTTGATCAATCTTATGTTAAAGGCACTATTATCCGTATACTTTTTCAGAATAACGATAACTT
TTATACGGTATTAAAAGCCGAGGTAATCGATACAAATGAAGATTTTGATGATGAAGTGACAGTTACAGGTTTCCTGCCTC
AAATTGCAGAGGGTGACACTTATACATTTACCGGAAAGATTATGTTACACGCTAAGTACGGGAAACAATTACAGGCAGAG
AAATTTGAGAAGGATTTACCACAGTCAAAAGACGGCATCATTCATTATCTTTCCAGCGACCTATTTAAAGGTGTCGGCAA
AAAAACAGCACGTACAATTGTTGAAATACTTGGCGAAGATGCACTGAATATTATTTTAGATGATAAAAGCAGTCTGGACC
AGATTCCGAAATTATCGCAAGATAAAAAAGATTTAATTTACAATACAATCAATGAAAATCAAGCGATTGAGAAAGTAATG
ATTCAATTAAATGATTGGGGCTTTGGCCCTCAGCTTGCAATGAAAATCTATCAGTTTTACAAAGACGATACGATAAGAGT
AATAAATGAATCACCTTATCAATTAGTGATGGATATCGAAGGTATAGGTTTTAACAAAGCTGATGAATTAGCCCGTCATA
TCGGTATAGATAACAATCATCCTGAACGATTAAAAGCAGCATTAGTTTATGGTATGGAGCAGGCGTCATTACAGAATGGT
CATACTTACATTCCGGATCAGATTTTACTCGAGACAAGCTTCAATCTATTAACTAAGAATGGTTCTGAAGTTAACCCCGA
TGCATTAGTAGATGCATTAACTGAACTTTGCGAAGAGAAGAAATTACTTGTCGAACATGAAAAAAATATTTATATACCTA
GTTTATTTTATTCTGAAACAAAGACCGTTCAAATATTACACCGATTAATGAATCATCAAGATCAACTTAAGCAGTTTGAG
CAATCTGAAATAATGCTTGCTATTGGAGAGATTGAACAGTTATTTGAAGTGTCATATGCAGAAAAACAGAAGGATGCTCT
AATGCAGGCGATGCATAGTAAACTGATGATTTTATCTGGTGGTCCTGGTACTGGGAAAACAACGGTTGTTAGAGGTATTG
TGACACTTTATGCAGAGCTGCATGGATTAAGTCTTGACTATAATGATTATGATGGGCAGGACTTTCCGGTAGTTGTTGCA
GCACCAACAGGTCGTGCATCGAAACGACTCTATGAATCCACTGGATTGGAAGCAACTACGATTCATAGACTTATCGGTTG
GACCCGAGATAATAAGCCAGATGATATTCTGGAAAATGAAATTACTGCAAAGCTTATCATTATTGATGAGATGTCTATGG
TTGACACGTGGTTAATGTTTCAATTGATGAAAGCAGTACCAAATGACGCTCAGATCATTTTTGTAGGTGATCAGGATCAG
TTGCCATCCGTAGGTCCAGGACAAGTATTTAAAGATTTAATAGAGTCTCAAATTATTCCTCAGATTGAACTGAATGAAGT
TTATCGTCAGCAGGAAGGATCTTCTATCGTTGAACTGGCACATCAGATTAAGCGAAATGAACCATTCGATATCACAAAAC
GATACAGTGATAGAAGTTTTATTCCATGTCAAACGGATCAAATTCCAGAAGTTATCGAGAAAATCGTTACATCAGCTGTT
AATAAAGGTTACGATATGCGGGACATTCAGGTGCTCGCGCCAATTTATCGAGGTAATGCAGGGATTCGTGCATTAAATAA
AGTTTTACAGAAAATATTAAATCCACCAGAAGATAAAAAGCGAGAAATGGAATTTGGTGATGTTGTCTTTAGAAATCACG
ATAAAGTTTTACAGCTTGTTAACCGACCTGAAGATGGTGTATTTAACGGAGACATCGGAGAAATCGTAGGTATCTTTAAA
GCAGCAGAAAATGCACTGAATAAGGATGTCGTCATTGTAGATTATGATGGGAATGAAGTAACGTATACAAAAGCTGATTT
AATTGAAATTACCCATGCATATTGTTGTTCGATTCATAAAGCTCAAGGGTCAGAATTTCCGATTGTCATTATGCCTGTTG
TCAATCAGTACTATAGAATGCTTCAGAAAAATATATTATATACAGGATTAACACGTGCGAAACAGTCACTTATCTTTTGC
GGTGATGTTAATGCCTTTAATGATGGTATAAAAAGATTAGGAAATGCCAGATTCACTTCTTTTTATCAATTTTTAGTGGA
TTATTTTAGCACAGATGATCAGAAAGACATTGTAAAACGCGATGCAAATGCCCATGAAATTATACATGATGAAGGATTAA
ATAGCTTGCCAATTCAAGTTGGTGAAATGACCGAAGAGAATATGTATCTCATTTCACCGATGATTAATATGGGAGACATA
TCTCCCTATGATTATGTTTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (339-545)

• Helix-hairpin-helix containing domain (HHH_RecD2) (152-243)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-653)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (672-719)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	53.005	90.819	0.481