Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACN6I1_RS05460 Genome accession   NZ_CP183813
Coordinates   1232380..1234224 (+) Length   614 a.a.
NCBI ID   WP_220796874.1    Uniprot ID   -
Organism   Paraclostridium dentum strain IIB4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1227380..1239224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6I1_RS05450 - 1229588..1230031 (-) 444 WP_220796872.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACN6I1_RS05455 - 1230183..1232387 (+) 2205 WP_220796873.1 ABC transporter ATP-binding protein -
  ACN6I1_RS05460 rcrQ 1232380..1234224 (+) 1845 WP_220796874.1 ABC transporter ATP-binding protein Regulator
  ACN6I1_RS05465 cspD 1234335..1234538 (+) 204 WP_021429181.1 cold-shock protein CspD -
  ACN6I1_RS05470 asnB 1234760..1236598 (+) 1839 WP_419743016.1 asparagine synthase (glutamine-hydrolyzing) -
  ACN6I1_RS05475 - 1236618..1237307 (+) 690 WP_419743017.1 response regulator transcription factor -
  ACN6I1_RS05480 - 1237310..1238764 (+) 1455 WP_419743018.1 ATP-binding protein -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 68358.08 Da        Isoelectric Point: 6.7347

>NTDB_id=1106271 ACN6I1_RS05460 WP_220796874.1 1232380..1234224(+) (rcrQ) [Paraclostridium dentum strain IIB4]
MSNKKQNTPKMGGPMGGMRGTEKAKDFKGTMKNLFNYLKPYRISIFIVVIFAIGSSAFSIVGPKVLGKATTEIFEGLIRK
VSNQGNAGIDFNYIGKVLLILLGLYVISALFSFVQSFIVSGISQKVSYKLRKEISEKINRMPLKYFDKRTHGEVLSRITN
DIDTLSQNLNQIMTQIITAVTTVIGVLIMMLSISWQMTIASLLILPISMIIIGFIVKNSQSHFKAQQKYLGHVNGQVEET
YGGHNIVKAFNREDAAIAEFNELNDKLYESAWKSQFLSGMMMPMMTFIGNLGYVLVSILGGYFTIKKTIQVGDILSFIQY
VRSFNQPIAQTAQVANIMQSMAAAAERAFEFLDEEEEIQVSDHPVSVENIKGDVSFDHVNFGYSEDKIIINDFTTNIKAG
QKVAIVGPTGAGKTTVVKLLMRFYDVNKGAILIDGKNINDFNRADLRSLFGMVLQDTWLFNGSIMENIRYSKLNATDEEV
IEASKAAHVHHFVKTLPAGYSMELNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMENLMEGR
TSFIIAHRLSTIKDADLILVMKDGDIIEQGSHEELLKADGFYASLYNSQFEDCE

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=1106271 ACN6I1_RS05460 WP_220796874.1 1232380..1234224(+) (rcrQ) [Paraclostridium dentum strain IIB4]
ATGAGTAATAAAAAGCAAAATACTCCTAAAATGGGCGGACCTATGGGAGGAATGAGAGGAACAGAAAAAGCAAAAGATTT
TAAAGGTACAATGAAAAATCTTTTCAATTATTTAAAACCTTACAGAATATCTATATTTATAGTAGTTATATTTGCAATAG
GGAGTTCTGCATTCTCTATAGTAGGACCTAAGGTATTAGGTAAAGCTACTACTGAGATATTTGAAGGACTGATTAGAAAA
GTTAGTAATCAAGGAAATGCTGGGATAGATTTTAATTATATAGGCAAAGTTCTTTTAATTTTATTAGGACTATATGTAAT
AAGTGCGTTATTCTCATTTGTTCAATCATTTATAGTTTCTGGAATATCTCAAAAGGTTTCATATAAACTGAGAAAAGAAA
TTTCAGAAAAAATAAATCGTATGCCACTTAAGTATTTTGATAAAAGAACACATGGTGAAGTACTATCAAGAATTACAAAT
GATATAGATACGTTAAGTCAAAACTTAAATCAAATTATGACTCAAATTATTACAGCTGTTACAACTGTAATAGGGGTTCT
TATAATGATGTTATCTATAAGTTGGCAAATGACTATAGCTTCATTATTAATATTACCTATATCTATGATAATAATAGGTT
TTATTGTTAAGAACTCACAAAGCCACTTTAAAGCTCAACAAAAATATTTAGGTCATGTCAATGGTCAAGTTGAAGAAACT
TATGGTGGACACAATATAGTTAAAGCATTCAATAGAGAAGATGCAGCTATAGCAGAGTTTAATGAGTTAAATGATAAGTT
ATATGAATCTGCATGGAAATCTCAATTCCTATCTGGAATGATGATGCCGATGATGACGTTTATAGGTAACTTAGGTTATG
TTTTAGTATCTATATTAGGTGGATACTTTACTATAAAGAAAACTATCCAAGTTGGGGATATACTTTCATTTATACAATAT
GTAAGAAGTTTTAACCAGCCAATAGCTCAAACTGCACAAGTTGCAAATATAATGCAATCTATGGCAGCAGCAGCAGAAAG
AGCATTTGAATTTTTAGATGAAGAAGAAGAAATCCAAGTAAGTGACCATCCAGTTAGCGTTGAAAATATCAAAGGGGATG
TTTCTTTTGATCATGTTAACTTTGGATATTCTGAAGATAAAATAATAATAAATGACTTTACAACAAATATAAAAGCAGGA
CAAAAAGTAGCTATAGTTGGGCCTACTGGTGCTGGTAAAACTACAGTTGTAAAATTATTAATGCGTTTTTATGATGTAAA
TAAAGGTGCTATACTGATAGATGGTAAAAATATAAATGATTTTAACAGAGCTGACTTACGTAGCTTATTTGGAATGGTTT
TACAAGACACATGGCTATTTAATGGTAGTATAATGGAAAACATAAGATACTCTAAGCTTAATGCTACTGATGAAGAGGTT
ATAGAGGCATCTAAAGCAGCTCATGTGCATCACTTTGTAAAAACTCTTCCAGCAGGATATAGCATGGAATTAAATGAAGA
AGCCAGTAACGTATCTCAAGGTCAAAAGCAACTTTTAACTATAGCTCGTGCGATTTTAGCAGATCCTAAAATACTTATAT
TAGATGAAGCTACTAGTTCAGTTGATACTCGTACAGAAGTTTTAATACAAAAAGCTATGGAAAATCTTATGGAAGGTAGA
ACAAGCTTTATAATAGCTCATAGATTATCAACTATAAAAGATGCAGATTTAATACTAGTTATGAAAGATGGAGATATAAT
TGAGCAAGGAAGCCATGAAGAATTATTAAAAGCTGATGGATTCTATGCATCTTTATATAATAGTCAATTTGAAGACTGTG
AATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(45-327)

ABC transporter (ABC_tran)

(391-539)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.877

95.44

0.495

Multiple sequence alignment