Detailed information NTG1105072

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACNR9X_RS08165
• Genome accession: NZ_CP183293
• Coordinates: 1611298..1612077 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain F68
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1606298..1617077

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNR9X_RS08145 (ACNR9X_08145)	trmFO	1606985..1608292 (+)	1308	WP_003154273.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ACNR9X_RS08150 (ACNR9X_08150)	xerC	1608362..1609279 (+)	918	WP_043867088.1	tyrosine recombinase XerC	-
ACNR9X_RS08155 (ACNR9X_08155)	hslV	1609295..1609840 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
ACNR9X_RS08160 (ACNR9X_08160)	hslU	1609857..1611260 (+)	1404	WP_014305002.1	HslU--HslV peptidase ATPase subunit	-
ACNR9X_RS08165 (ACNR9X_08165)	codY	1611298..1612077 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACNR9X_RS08170 (ACNR9X_08170)	flgB	1612431..1612820 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
ACNR9X_RS08175 (ACNR9X_08175)	flgC	1612820..1613272 (+)	453	WP_003154259.1	flagellar basal body rod protein FlgC	-
ACNR9X_RS08180 (ACNR9X_08180)	fliE	1613283..1613603 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
ACNR9X_RS08185 (ACNR9X_08185)	fliF	1613646..1615256 (+)	1611	WP_003154257.1	flagellar basal-body MS-ring/collar protein FliF	-
ACNR9X_RS08190 (ACNR9X_08190)	fliG	1615269..1616285 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ACNR9X_RS08195 (ACNR9X_08195)	fliH	1616278..1617033 (+)	756	WP_003154255.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1105072 ACNR9X_RS08165 WP_003154263.1 1611298..1612077(+) (codY) [Bacillus velezensis strain F68]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1105072 ACNR9X_RS08165 WP_003154263.1 1611298..1612077(+) (codY) [Bacillus velezensis strain F68]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471