Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   HV96_RS29265 Genome accession   NZ_CP008871
Coordinates   6131302..6131826 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain W45909     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6126302..6136826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV96_RS29250 (HV96_30935) aroB 6127418..6128524 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  HV96_RS29255 (HV96_30930) aroK 6128574..6129092 (-) 519 WP_003095833.1 shikimate kinase AroK -
  HV96_RS29260 (HV96_30925) pilQ 6129104..6131248 (-) 2145 WP_023114914.1 type 4a pilus secretin PilQ Machinery gene
  HV96_RS29265 (HV96_30920) comL/pilP 6131302..6131826 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  HV96_RS29270 (HV96_30915) pilO 6131823..6132446 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  HV96_RS29275 (HV96_30910) pilN 6132443..6133039 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  HV96_RS29280 (HV96_30905) pilM 6133039..6134103 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  HV96_RS29285 (HV96_30900) - 6134288..6136759 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=110489 HV96_RS29265 WP_003095836.1 6131302..6131826(-) (comL/pilP) [Pseudomonas aeruginosa strain W45909]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=110489 HV96_RS29265 WP_003095836.1 6131302..6131826(-) (comL/pilP) [Pseudomonas aeruginosa strain W45909]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362

Multiple sequence alignment