Detailed information NTG1104370

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACNM63_RS08185
• Genome accession: NZ_CP183191
• Coordinates: 1624652..1625431 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain QC02
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1619652..1630431

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNM63_RS08165 (ACNM63_08165)	trmFO	1620339..1621646 (+)	1308	WP_029973471.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ACNM63_RS08170 (ACNM63_08170)	xerC	1621716..1622633 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
ACNM63_RS08175 (ACNM63_08175)	hslV	1622649..1623194 (+)	546	WP_014417767.1	ATP-dependent protease subunit HslV	-
ACNM63_RS08180 (ACNM63_08180)	hslU	1623211..1624614 (+)	1404	WP_007611413.1	HslU--HslV peptidase ATPase subunit	-
ACNM63_RS08185 (ACNM63_08185)	codY	1624652..1625431 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACNM63_RS08190 (ACNM63_08190)	flgB	1625784..1626173 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
ACNM63_RS08195 (ACNM63_08195)	flgC	1626173..1626625 (+)	453	WP_419246951.1	flagellar basal body rod protein FlgC	-
ACNM63_RS08200 (ACNM63_08200)	fliE	1626636..1626956 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
ACNM63_RS08205 (ACNM63_08205)	fliF	1626999..1628609 (+)	1611	WP_003154257.1	flagellar basal-body MS-ring/collar protein FliF	-
ACNM63_RS08210 (ACNM63_08210)	fliG	1628622..1629638 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ACNM63_RS08215 (ACNM63_08215)	fliH	1629631..1630386 (+)	756	WP_017417778.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1104370 ACNM63_RS08185 WP_003154263.1 1624652..1625431(+) (codY) [Bacillus velezensis strain QC02]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1104370 ACNM63_RS08185 WP_003154263.1 1624652..1625431(+) (codY) [Bacillus velezensis strain QC02]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCAGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471