Detailed information NTG1103783

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACNM7T_RS08430
• Genome accession: NZ_CP183041
• Coordinates: 1655515..1656294 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus amyloliquefaciens strain Scm
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1650515..1661294

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNM7T_RS08410 (ACNM7T_08410)	trmFO	1651202..1652509 (+)	1308	WP_094031705.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ACNM7T_RS08415 (ACNM7T_08415)	xerC	1652579..1653496 (+)	918	WP_032871470.1	tyrosine recombinase XerC	-
ACNM7T_RS08420 (ACNM7T_08420)	hslV	1653512..1654057 (+)	546	WP_014417767.1	ATP-dependent protease subunit HslV	-
ACNM7T_RS08425 (ACNM7T_08425)	hslU	1654074..1655477 (+)	1404	WP_007409775.1	HslU--HslV peptidase ATPase subunit	-
ACNM7T_RS08430 (ACNM7T_08430)	codY	1655515..1656294 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACNM7T_RS08435 (ACNM7T_08435)	flgB	1656648..1657037 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
ACNM7T_RS08440 (ACNM7T_08440)	flgC	1657037..1657489 (+)	453	WP_015239851.1	flagellar basal body rod protein FlgC	-
ACNM7T_RS08445 (ACNM7T_08445)	fliE	1657500..1657820 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
ACNM7T_RS08450 (ACNM7T_08450)	fliF	1657863..1659473 (+)	1611	WP_076424137.1	flagellar basal-body MS-ring/collar protein FliF	-
ACNM7T_RS08455 (ACNM7T_08455)	fliG	1659486..1660502 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ACNM7T_RS08460 (ACNM7T_08460)	fliH	1660495..1661250 (+)	756	WP_015239852.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1103783 ACNM7T_RS08430 WP_003154263.1 1655515..1656294(+) (codY) [Bacillus amyloliquefaciens strain Scm]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1103783 ACNM7T_RS08430 WP_003154263.1 1655515..1656294(+) (codY) [Bacillus amyloliquefaciens strain Scm]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACACTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471