Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   D3W47_RS14235 Genome accession   NZ_CP182821
Coordinates   2885292..2885936 (-) Length   214 a.a.
NCBI ID   WP_418514452.1    Uniprot ID   -
Organism   Deinococcus sp. RM     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2880292..2890936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3W47_RS14210 (D3W47_014210) - 2882402..2883388 (+) 987 WP_119674444.1 putative Ig domain-containing protein -
  D3W47_RS14215 (D3W47_014215) - 2883385..2883840 (+) 456 WP_119674443.1 hypothetical protein -
  D3W47_RS14220 (D3W47_014220) - 2883840..2884364 (+) 525 WP_119674459.1 hypothetical protein -
  D3W47_RS14225 (D3W47_014225) - 2884472..2884687 (+) 216 WP_046843150.1 RNA-binding S4 domain-containing protein -
  D3W47_RS14230 (D3W47_014230) - 2884689..2885234 (+) 546 WP_119674442.1 DUF1684 domain-containing protein -
  D3W47_RS14235 (D3W47_014235) comF 2885292..2885936 (-) 645 WP_418514452.1 ComF family protein Machinery gene
  D3W47_RS14240 (D3W47_014240) - 2885986..2886504 (-) 519 WP_369849838.1 hypothetical protein -
  D3W47_RS14245 (D3W47_014245) - 2886679..2886957 (+) 279 WP_058975434.1 hypothetical protein -
  D3W47_RS14250 (D3W47_014250) - 2887018..2887677 (-) 660 WP_119673676.1 hypothetical protein -
  D3W47_RS14255 (D3W47_014255) gatB 2887674..2889110 (-) 1437 WP_119673675.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  D3W47_RS14260 (D3W47_014260) - 2889184..2889975 (-) 792 WP_119673674.1 M15 family metallopeptidase -
  D3W47_RS14265 (D3W47_014265) - 2890153..2890554 (+) 402 WP_147363384.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 22608.21 Da        Isoelectric Point: 11.1076

>NTDB_id=1102646 D3W47_RS14235 WP_418514452.1 2885292..2885936(-) (comF) [Deinococcus sp. RM]
MTAAFGTALLGALRTLLPRACPGCGAQLGAHAGLCPACRAALRPQVQAHSPLRAHPEPHLVTLGPYSGVRRRAVRELKFA
QARDLARILGEALATGVPADWNVQAVIPVPLHPGRQRQRGFNQAELLGRALACALAVPCVPALTRTRATAQQARRHAAQR
EDLHGAFRAHEGFLPSGPVLLIDDVLTTGHTAQACQDALKQAGAPQVYVAVVAR

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1102646 D3W47_RS14235 WP_418514452.1 2885292..2885936(-) (comF) [Deinococcus sp. RM]
ATGACCGCTGCGTTCGGAACGGCCCTGCTCGGCGCGCTGCGCACCCTGCTGCCCCGCGCCTGCCCCGGCTGCGGCGCGCA
GCTCGGCGCGCACGCCGGACTGTGCCCCGCCTGCCGCGCCGCCCTGCGCCCACAGGTGCAGGCCCACAGTCCCCTGCGCG
CCCATCCTGAACCGCACCTTGTGACGCTCGGGCCGTACAGCGGCGTGCGCCGACGCGCCGTGCGGGAACTGAAGTTCGCG
CAGGCCCGCGACCTCGCCCGCATCCTCGGCGAGGCGCTCGCCACCGGCGTACCCGCCGACTGGAACGTGCAGGCCGTCAT
TCCCGTTCCGCTGCACCCTGGGCGGCAGCGCCAGCGCGGCTTCAATCAGGCCGAACTGCTGGGCCGCGCCCTGGCCTGCG
CCCTGGCGGTCCCCTGCGTTCCCGCCCTGACCCGCACCCGCGCCACCGCGCAGCAGGCCCGGCGGCACGCCGCGCAGCGC
GAGGACCTGCACGGCGCCTTCCGCGCGCACGAGGGCTTCCTGCCCAGCGGGCCGGTCCTGCTGATCGACGACGTCCTGAC
CACCGGGCACACCGCGCAGGCCTGCCAGGACGCCCTGAAACAGGCGGGCGCACCGCAGGTGTACGTAGCGGTCGTCGCCC
GCTGA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(13-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.285

96.729

0.612

Multiple sequence alignment