Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   D3W47_RS06590 Genome accession   NZ_CP182821
Coordinates   1338203..1338808 (-) Length   201 a.a.
NCBI ID   WP_058977365.1    Uniprot ID   A0A6I4YET8
Organism   Deinococcus sp. RM     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1333203..1343808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3W47_RS06570 (D3W47_006570) - 1334373..1335554 (+) 1182 WP_119674819.1 glycosyltransferase family 4 protein -
  D3W47_RS06575 (D3W47_006575) - 1335514..1336188 (-) 675 WP_119674826.1 glycosyltransferase -
  D3W47_RS06580 (D3W47_006580) - 1336242..1337444 (+) 1203 WP_233555377.1 MFS transporter -
  D3W47_RS06585 (D3W47_006585) - 1337428..1338144 (+) 717 WP_119674818.1 polysaccharide deacetylase family protein -
  D3W47_RS06590 (D3W47_006590) recR 1338203..1338808 (-) 606 WP_058977365.1 recombination mediator RecR Machinery gene
  D3W47_RS06595 (D3W47_006595) - 1338913..1339203 (-) 291 WP_119674817.1 YbaB/EbfC family nucleoid-associated protein -
  D3W47_RS06600 (D3W47_006600) - 1339257..1339472 (-) 216 WP_119674816.1 hypothetical protein -
  D3W47_RS06605 (D3W47_006605) - 1339526..1340203 (-) 678 WP_058977362.1 NUDIX hydrolase -
  D3W47_RS06610 (D3W47_006610) - 1340326..1342329 (-) 2004 WP_119674815.1 amylo-alpha-1,6-glucosidase -
  D3W47_RS06615 (D3W47_006615) infC 1342451..1343080 (+) 630 WP_119674824.1 translation initiation factor IF-3 -
  D3W47_RS06620 (D3W47_006620) - 1343226..1343471 (+) 246 WP_046844456.1 glutaredoxin family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21939.26 Da        Isoelectric Point: 6.3353

>NTDB_id=1102639 D3W47_RS06590 WP_058977365.1 1338203..1338808(-) (recR) [Deinococcus sp. RM]
MKYPPSLVALIRELSRLPGIGPKSAQRLAFHLFEQPREDIERLSRALLEAKRDLHTCPVCFNITDAERCDVCSDPSRDQG
VICVVEEPGDVIAIERSGEYRGLYHVLHGVLSPMNGVGPDKLHIRPLLPRVQEGQEVILATGTTVEGDATALYLQRLLEP
LGAVVSRIAYGLPVGGALEYADEVTLGRALAGRQRVSKPQG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1102639 D3W47_RS06590 WP_058977365.1 1338203..1338808(-) (recR) [Deinococcus sp. RM]
GTGAAGTACCCCCCATCGTTGGTGGCGCTCATCCGTGAGCTGTCGCGTCTGCCCGGCATCGGGCCGAAGAGCGCGCAGCG
GCTGGCGTTCCACCTGTTCGAACAGCCCCGTGAGGACATCGAGCGTCTGTCGCGGGCGCTGCTGGAAGCCAAGCGTGACC
TGCACACCTGCCCGGTGTGTTTCAACATCACCGACGCCGAGAGGTGCGACGTGTGCAGCGACCCCAGCCGCGACCAGGGC
GTGATCTGCGTCGTGGAGGAGCCCGGCGACGTGATCGCCATCGAGCGCAGCGGCGAGTACCGCGGGCTGTATCACGTCCT
GCACGGGGTGCTGAGTCCCATGAACGGCGTGGGGCCGGACAAGCTGCACATCCGCCCGCTGCTGCCGCGCGTGCAGGAGG
GGCAGGAGGTCATCCTGGCGACCGGCACGACCGTGGAGGGCGACGCGACGGCGCTGTACCTGCAGCGGTTGCTGGAGCCG
CTGGGTGCGGTCGTGAGCCGCATCGCGTACGGGCTGCCGGTGGGCGGCGCGCTGGAGTACGCGGACGAGGTGACGCTGGG
CCGCGCGCTGGCCGGTCGTCAGCGCGTCAGCAAACCGCAGGGCTGA

Domains

Predicted by InterproScan.

Toprim domain (Toprim_4)

(81-169)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I4YET8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

89.5

99.502

0.891

Multiple sequence alignment