Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   D3W47_RS02060 Genome accession   NZ_CP182821
Coordinates   396749..397846 (+) Length   365 a.a.
NCBI ID   WP_233555423.1    Uniprot ID   -
Organism   Deinococcus sp. RM     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 391749..402846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3W47_RS02040 (D3W47_002040) fumC 392415..393809 (+) 1395 WP_119675128.1 class II fumarate hydratase -
  D3W47_RS02045 (D3W47_002045) - 394070..394480 (+) 411 WP_046843738.1 hypothetical protein -
  D3W47_RS02050 (D3W47_002050) - 394610..395269 (+) 660 WP_046843739.1 response regulator transcription factor -
  D3W47_RS02055 (D3W47_002055) - 395269..396711 (+) 1443 WP_119675129.1 sensor histidine kinase -
  D3W47_RS02060 (D3W47_002060) dprA 396749..397846 (+) 1098 WP_233555423.1 DNA-processing protein DprA Machinery gene
  D3W47_RS02065 (D3W47_002065) - 397855..398142 (-) 288 WP_119675130.1 hypothetical protein -
  D3W47_RS02070 (D3W47_002070) - 398161..399120 (+) 960 WP_119675131.1 NAD-dependent epimerase/dehydratase family protein -
  D3W47_RS02075 (D3W47_002075) dnaA 399245..400618 (+) 1374 WP_119675144.1 chromosomal replication initiator protein DnaA -
  D3W47_RS02080 (D3W47_002080) dnaN 400978..402060 (+) 1083 WP_046843743.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 37834.54 Da        Isoelectric Point: 6.6119

>NTDB_id=1102629 D3W47_RS02060 WP_233555423.1 396749..397846(+) (dprA) [Deinococcus sp. RM]
MTSPLFDPPAPVPPDERRALLALRFCAQLGPRRIEALRAHFGSAVAAWQAPLRELREVPGLDARAAQAVGTPAALTRADQ
ELARVAQEDVTLLLRGLPGYPAALDALGDPPPALWVRGPLPDLPTVPRAIGIVGTRAASPHAQAFTRMLAADLARAGVIV
VSGLARGIDTAAHGAAVEAGGLSIGVLGSAVNRVYPSENARLAARLTLVSEYPLDTGPAQHHFPTRNRLIAALSAGTVVV
EGERKSGSLITATHALECGRTVFAVPGRAGDPRAAGPHALLRDGAVLTEGAADLLTELGWGSVPDAPLPDLPTEQARVLA
ALTGPVTLDDLVIATGLPLPDVQTALVMLNLLGLAEEVGGRWVRR

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=1102629 D3W47_RS02060 WP_233555423.1 396749..397846(+) (dprA) [Deinococcus sp. RM]
GTGACCAGTCCGCTGTTCGACCCGCCGGCCCCCGTCCCGCCCGACGAGCGGCGCGCCCTGCTGGCCCTGCGCTTCTGTGC
GCAGCTCGGTCCCCGCCGCATCGAGGCTCTCCGGGCGCATTTCGGGTCGGCGGTGGCCGCGTGGCAGGCCCCGCTACGGG
AATTGCGGGAGGTGCCGGGCCTGGACGCCCGCGCCGCGCAGGCTGTCGGGACCCCGGCGGCCCTGACCCGCGCCGACCAG
GAACTCGCCCGGGTGGCGCAGGAGGACGTGACGCTGCTGCTGCGCGGCCTGCCCGGCTACCCGGCGGCGCTGGACGCACT
GGGCGACCCGCCGCCCGCCCTGTGGGTGCGTGGCCCGCTGCCGGACCTGCCGACCGTGCCGCGCGCCATCGGGATCGTGG
GCACCCGCGCGGCCAGCCCGCACGCGCAGGCGTTCACGCGGATGCTCGCCGCGGACCTCGCGCGGGCCGGGGTGATCGTC
GTCAGTGGACTGGCGCGCGGCATCGACACCGCCGCGCACGGGGCGGCGGTCGAGGCGGGTGGGCTCAGCATCGGGGTGCT
GGGCAGCGCCGTGAACCGCGTGTACCCCAGCGAGAACGCCCGGCTGGCCGCGCGGCTCACGCTGGTCAGCGAGTACCCGC
TGGACACCGGCCCCGCGCAGCATCACTTCCCCACCCGCAACCGCCTCATCGCCGCGCTGAGCGCCGGAACGGTCGTCGTG
GAGGGCGAACGCAAGTCCGGATCACTGATCACGGCCACGCACGCCCTGGAGTGCGGCCGGACGGTGTTCGCCGTGCCGGG
CCGCGCCGGGGACCCGCGCGCCGCCGGACCGCACGCCCTGCTCCGCGACGGCGCCGTGCTCACCGAGGGGGCCGCCGACC
TCCTGACCGAACTGGGCTGGGGCAGCGTCCCGGACGCCCCACTGCCGGACCTCCCAACCGAGCAGGCGCGGGTACTGGCC
GCCCTGACGGGGCCGGTCACGCTGGACGACCTCGTGATCGCCACGGGCCTGCCACTCCCGGACGTGCAGACGGCGCTGGT
GATGCTGAACCTGCTGGGCCTCGCCGAGGAGGTCGGAGGGCGCTGGGTGCGCCGCTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(86-287)

DprA winged helix domain (DprA_WH)

(304-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

68.376

96.164

0.658

Multiple sequence alignment