Detailed information NTG1102318

Bioinformatically predicted

Overview

• Name: comF
• Type: Machinery gene
• Locus tag: ACNFU2_RS10060
• Genome accession: NZ_CP182581
• Coordinates: 2267000..2267650 (+)
• Length: 216 a.a.
• NCBI ID: WP_273649249.1
• Uniprot ID: -
• Organism: Chryseobacterium sp. PTM-20240506
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2262000..2272650

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNFU2_RS10045 (ACNFU2_10045)	aceA	2262258..2263538 (-)	1281	WP_273649244.1	isocitrate lyase	-
ACNFU2_RS10050 (ACNFU2_10050)	aceB	2263736..2265310 (-)	1575	WP_273649246.1	malate synthase A	-
ACNFU2_RS10055 (ACNFU2_10055)	-	2265437..2266921 (+)	1485	WP_273649248.1	helix-turn-helix domain-containing protein	-
ACNFU2_RS10060 (ACNFU2_10060)	comF	2267000..2267650 (+)	651	WP_273649249.1	ComF family protein	Machinery gene
ACNFU2_RS10065 (ACNFU2_10065)	-	2267727..2268419 (+)	693	WP_273649250.1	alpha/beta fold hydrolase	-
ACNFU2_RS10070 (ACNFU2_10070)	upp	2268420..2269070 (-)	651	WP_273649251.1	uracil phosphoribosyltransferase	-

Sequence

Protein

• Length: 216 a.a.
• Molecular weight: 25444.49 Da
• Isoelectric Point: 8.8581

>NTDB_id=1102318 ACNFU2_RS10060 WP_273649249.1 2267000..2267650(+) (comF) [Chryseobacterium sp. PTM-20240506]
MILDLLFPNRCIHCNRIIDADLLVCSSCFEHIHFTHFNYFEDNLFKEKCKLLFPVENAYALMYFEEENLSRKIIHELKYK
NRKKTGKVIANWTIGILDFKNNKPDLLVSVPLHPKKERERGFNQLHLFTEILSNQYHIPFDHHLIKRNYYSQAQALKDKK
HRLKNDNTFSISRKVSDKHILLIDDVFTTGNTIATIAWEILNSGNNKVSILVMAID

Nucleotide

• Length: 651 bp

>NTDB_id=1102318 ACNFU2_RS10060 WP_273649249.1 2267000..2267650(+) (comF) [Chryseobacterium sp. PTM-20240506]
ATGATTCTTGACCTTCTTTTCCCCAATCGTTGCATCCACTGCAACCGGATCATCGATGCTGACCTTCTGGTATGCTCCTC
CTGTTTTGAACATATTCACTTTACCCATTTCAATTATTTTGAAGATAACCTGTTTAAAGAAAAGTGCAAATTATTGTTTC
CGGTTGAAAATGCATATGCGCTCATGTATTTTGAGGAGGAAAACTTAAGCCGTAAGATCATCCACGAATTAAAATATAAA
AACAGGAAAAAAACCGGGAAAGTAATCGCAAACTGGACAATCGGTATACTGGATTTTAAAAATAACAAACCTGATTTACT
GGTAAGCGTTCCACTTCATCCTAAAAAAGAAAGAGAAAGAGGATTTAATCAATTGCATCTGTTTACAGAAATACTATCCA
ACCAATATCATATTCCATTTGACCATCACCTGATCAAAAGAAACTACTACTCACAAGCTCAGGCCCTAAAAGATAAAAAA
CATCGCCTAAAAAATGACAACACTTTTTCAATATCCCGAAAGGTATCTGATAAACATATTTTATTAATTGATGACGTTTT
TACCACCGGCAATACGATCGCAACTATAGCATGGGAAATCTTAAATAGCGGCAATAATAAAGTGAGCATTCTGGTAATGG
CAATAGATTAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (2-34)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comF	Riemerella anatipestifer ATCC 11845 = DSM 15868	50.463	100	0.505