Detailed information NTG1102272

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACNFKI_RS09080
• Genome accession: NZ_CP182571
• Coordinates: 1764430..1765209 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain DY201
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1759430..1770209

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNFKI_RS09060 (ACNFKI_09060)	trmFO	1760117..1761424 (+)	1308	WP_003154273.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ACNFKI_RS09065 (ACNFKI_09065)	xerC	1761494..1762411 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
ACNFKI_RS09070 (ACNFKI_09070)	hslV	1762427..1762972 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
ACNFKI_RS09075 (ACNFKI_09075)	hslU	1762989..1764392 (+)	1404	WP_014305002.1	HslU--HslV peptidase ATPase subunit	-
ACNFKI_RS09080 (ACNFKI_09080)	codY	1764430..1765209 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACNFKI_RS09085 (ACNFKI_09085)	flgB	1765563..1765952 (+)	390	WP_303303909.1	flagellar basal body rod protein FlgB	-
ACNFKI_RS09090 (ACNFKI_09090)	flgC	1765952..1766404 (+)	453	WP_003154259.1	flagellar basal body rod protein FlgC	-
ACNFKI_RS09095 (ACNFKI_09095)	fliE	1766415..1766735 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
ACNFKI_RS09100 (ACNFKI_09100)	fliF	1766778..1768388 (+)	1611	WP_003154257.1	flagellar basal-body MS-ring/collar protein FliF	-
ACNFKI_RS09105 (ACNFKI_09105)	fliG	1768401..1769417 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ACNFKI_RS09110 (ACNFKI_09110)	fliH	1769410..1770165 (+)	756	WP_015388237.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1102272 ACNFKI_RS09080 WP_003154263.1 1764430..1765209(+) (codY) [Bacillus velezensis strain DY201]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1102272 ACNFKI_RS09080 WP_003154263.1 1764430..1765209(+) (codY) [Bacillus velezensis strain DY201]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCTCTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471