Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACM1ND_RS12760 Genome accession   NZ_CP182500
Coordinates   2890467..2892317 (+) Length   616 a.a.
NCBI ID   WP_068938424.1    Uniprot ID   -
Organism   Paenibacillus sp. JJ1722     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2885467..2897317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM1ND_RS12740 (ACM1ND_12740) - 2886205..2887428 (+) 1224 WP_028541284.1 Ger(x)C family spore germination protein -
  ACM1ND_RS12745 (ACM1ND_12745) - 2887437..2887664 (+) 228 WP_226887813.1 hypothetical protein -
  ACM1ND_RS12750 (ACM1ND_12750) - 2888227..2888637 (+) 411 WP_028541283.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACM1ND_RS12755 (ACM1ND_12755) rcrP 2888711..2890474 (+) 1764 WP_023988614.1 ABC transporter ATP-binding protein Regulator
  ACM1ND_RS12760 (ACM1ND_12760) rcrQ 2890467..2892317 (+) 1851 WP_068938424.1 ABC transporter ATP-binding protein Regulator
  ACM1ND_RS12765 (ACM1ND_12765) - 2892438..2892746 (+) 309 WP_025723019.1 hypothetical protein -
  ACM1ND_RS12770 (ACM1ND_12770) - 2893091..2893444 (+) 354 WP_053325447.1 hypothetical protein -
  ACM1ND_RS12775 (ACM1ND_12775) - 2893690..2894109 (+) 420 WP_028541280.1 ester cyclase -
  ACM1ND_RS12780 (ACM1ND_12780) - 2894334..2895725 (-) 1392 WP_028541279.1 PLP-dependent aminotransferase family protein -
  ACM1ND_RS12785 (ACM1ND_12785) azlC 2895833..2896564 (+) 732 WP_023988621.1 azaleucine resistance protein AzlC -
  ACM1ND_RS12790 (ACM1ND_12790) - 2896545..2896877 (+) 333 WP_023988622.1 branched-chain amino acid transporter permease -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 67818.38 Da        Isoelectric Point: 6.1585

>NTDB_id=1101708 ACM1ND_RS12760 WP_068938424.1 2890467..2892317(+) (rcrQ) [Paenibacillus sp. JJ1722]
MDKNEHTVDSQQMKMNQGGPMGKGPAGGKGAGEKANNFKKTISQLVSYSKAYVPMIVLAMVLALVGSTLNVIGPDKLSDI
ANLIQEGIITGIDVSAVQKIVLVLALLYGFGLIFNYFQGFITATVSQRLTKKMRTELSRKIDHMPLKYFDSTSYGNVLSR
VTNDVDTIGQTLNNSLGTLVGALATFVGALIMMLYTNWIMTITGIVATLIGFCLMSVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEQAAKEVFHGINSRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCVVGALLVNQQTITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELADERHKTIKMDTAKGDVEFKHVRFGYNTDRMIIKDFSMKA
EAGQKIAIVGPTGAGKTTLVNLLMRFYELNDGEIYIDGTPISQLTRENIHELFCMVLQDTWLFEGTIRDNIVFSKDHVTD
EQVEAASRAVGLHSFIKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDSPMLILDEATSSVDTRTELLIQQAMDQLTV
GKTSFVIAHRLSTIKNADLILVMKDGDIIEMGNHEELLAKGGFYADLYNSQFEHAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=1101708 ACM1ND_RS12760 WP_068938424.1 2890467..2892317(+) (rcrQ) [Paenibacillus sp. JJ1722]
ATGGATAAGAATGAACACACCGTCGACAGCCAGCAAATGAAAATGAATCAAGGAGGTCCCATGGGTAAAGGCCCTGCGGG
GGGCAAGGGTGCTGGTGAAAAAGCGAATAATTTTAAAAAGACCATCAGCCAGCTTGTATCCTACAGCAAGGCCTATGTGC
CTATGATTGTACTAGCTATGGTACTGGCCCTGGTCGGCTCCACCCTCAACGTGATTGGCCCGGATAAGCTCAGTGATATT
GCCAACCTGATTCAGGAAGGAATCATAACCGGGATTGATGTAAGTGCTGTTCAGAAGATTGTTCTTGTATTGGCGCTTTT
ATATGGATTTGGTCTTATCTTTAACTATTTCCAGGGCTTCATTACAGCAACCGTCTCACAGCGTCTTACAAAGAAGATGC
GGACAGAGCTGTCTCGAAAAATCGATCATATGCCTTTGAAGTATTTTGACTCTACGAGTTACGGTAATGTGCTTAGCCGC
GTAACCAACGATGTCGATACCATCGGACAAACGTTAAACAACAGTCTCGGCACGCTTGTCGGTGCACTGGCTACCTTCGT
GGGCGCCTTGATTATGATGCTTTATACAAACTGGATCATGACCATTACCGGAATTGTAGCTACGCTGATCGGCTTTTGCC
TGATGAGCGTGATTATGAAGCATTCACAGAAATACTTTGTAGCACAGCAAGCGGAGCTTGGCCAGATCAACGGTCATATC
GAAGAAACCTATGCTGGTCATAACGTAGTCAAGGTATATAACGGGGAACAAGCAGCCAAGGAAGTGTTTCATGGCATTAA
CAGCCGCCTATATACAAATGCATGGAAGTCCCAGTTCATGTCTGGTCTGATGATGCCAGTCATGATGTTCATTGGAAATT
TTGGTTATGTCGCGGTTTGTGTCGTGGGAGCTTTGCTGGTCAACCAACAGACTATAACTATCGGAACTATTGTCGCCTTC
ATGGTGTATATTCGTCTGTTTACACAGCCCTTGTCGCAGCTGGCACAGGCCGCAACCAATCTGCAGTCGGCGGCTGCCGC
CAGTGAACGTGTATTCGAATTTCTGGGTGAAGAAGAATTGGCAGATGAGCGTCACAAGACCATAAAGATGGACACCGCCA
AAGGGGATGTCGAATTCAAACATGTCCGTTTCGGCTATAATACAGATCGTATGATTATCAAGGACTTCTCCATGAAAGCT
GAAGCTGGTCAGAAAATTGCCATTGTTGGTCCGACAGGTGCTGGTAAGACCACGCTCGTGAATTTGCTCATGCGGTTTTA
TGAGCTGAACGATGGAGAAATCTACATTGACGGAACCCCGATCAGCCAATTAACGCGTGAGAATATTCATGAATTATTCT
GTATGGTGCTTCAGGATACCTGGCTGTTCGAAGGAACGATTCGTGACAATATCGTCTTTTCCAAAGATCATGTTACCGAT
GAGCAGGTGGAAGCTGCTAGTAGAGCGGTGGGGCTGCACAGCTTCATTAAAACACTGCCGCAGGGCTATGATACAGTGCT
GGACGACAAAGCCAATCTCTCCGCCGGTCAAAAGCAATTGATTACCATTGCAAGAGCGATGATTGAAGATTCACCCATGC
TCATTCTGGATGAGGCCACAAGCTCGGTTGATACGCGTACGGAATTGCTGATTCAACAAGCGATGGACCAGCTGACTGTG
GGGAAAACCTCCTTTGTGATTGCTCACCGACTTTCGACGATCAAGAATGCGGATCTGATTCTGGTCATGAAGGATGGTGA
CATTATCGAAATGGGTAACCATGAGGAATTGCTGGCTAAAGGCGGCTTCTATGCTGATCTATACAACAGTCAGTTTGAAC
ATGCATCCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(394-541)

ABC transporter transmembrane region (ABC_membrane)

(58-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.326

93.669

0.528

Multiple sequence alignment