Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACNANF_RS17865 Genome accession   NZ_CP182325
Coordinates   3534940..3535719 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus cereus strain BSF-CH1     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3509646..3571405 3534940..3535719 within 0


Gene organization within MGE regions


Location: 3509646..3571405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNANF_RS17755 - 3510216..3511115 (-) 900 WP_000868217.1 polysaccharide deacetylase family protein -
  ACNANF_RS17760 pnp 3511267..3513405 (-) 2139 WP_000076737.1 polyribonucleotide nucleotidyltransferase -
  ACNANF_RS17765 rpsO 3513566..3513835 (-) 270 WP_001229392.1 30S ribosomal protein S15 -
  ACNANF_RS17770 ribF 3513936..3514907 (-) 972 WP_000766706.1 bifunctional riboflavin kinase/FAD synthetase -
  ACNANF_RS17775 truB 3514951..3515874 (-) 924 WP_000399352.1 tRNA pseudouridine(55) synthase TruB -
  ACNANF_RS17780 rbfA 3515961..3516317 (-) 357 WP_000776437.1 30S ribosome-binding factor RbfA -
  ACNANF_RS17785 - 3516333..3516614 (-) 282 WP_000582363.1 DUF503 domain-containing protein -
  ACNANF_RS17790 infB 3516611..3518671 (-) 2061 WP_000036343.1 translation initiation factor IF-2 -
  ACNANF_RS17795 - 3518676..3518987 (-) 312 WP_001286523.1 YlxQ family RNA-binding protein -
  ACNANF_RS17800 rnpM 3518988..3519260 (-) 273 WP_000071127.1 RNase P modulator RnpM -
  ACNANF_RS17805 nusA 3519272..3520378 (-) 1107 WP_000102604.1 transcription termination factor NusA -
  ACNANF_RS17810 rimP 3520396..3520866 (-) 471 WP_000359096.1 ribosome maturation factor RimP -
  ACNANF_RS17815 - 3521203..3525504 (-) 4302 WP_000060005.1 PolC-type DNA polymerase III -
  ACNANF_RS17820 - 3525629..3527329 (-) 1701 WP_000814299.1 proline--tRNA ligase -
  ACNANF_RS17825 rseP 3527439..3528695 (-) 1257 WP_001090243.1 RIP metalloprotease RseP -
  ACNANF_RS17830 dxr 3528713..3529855 (-) 1143 WP_000790373.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  ACNANF_RS17835 cdsA 3529879..3530670 (-) 792 WP_000813592.1 phosphatidate cytidylyltransferase -
  ACNANF_RS17840 uppS 3530688..3531464 (-) 777 WP_000971296.1 isoprenyl transferase -
  ACNANF_RS17845 frr 3531550..3532107 (-) 558 WP_000531501.1 ribosome recycling factor -
  ACNANF_RS17850 pyrH 3532110..3532832 (-) 723 WP_000042668.1 UMP kinase -
  ACNANF_RS17855 tsf 3532899..3533786 (-) 888 WP_001018578.1 translation elongation factor Ts -
  ACNANF_RS17860 rpsB 3533890..3534591 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  ACNANF_RS17865 codY 3534940..3535719 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACNANF_RS17870 hslU 3535797..3537188 (-) 1392 WP_000550078.1 ATP-dependent protease ATPase subunit HslU -
  ACNANF_RS17875 hslV 3537211..3537753 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  ACNANF_RS17880 xerC 3537796..3538695 (-) 900 WP_001101243.1 tyrosine recombinase XerC -
  ACNANF_RS17885 trmFO 3538761..3540065 (-) 1305 WP_000213003.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACNANF_RS17890 topA 3540114..3542192 (-) 2079 WP_001286963.1 type I DNA topoisomerase -
  ACNANF_RS17895 dprA 3542337..3543206 (-) 870 WP_000818060.1 DNA-processing protein DprA -
  ACNANF_RS17900 sucD 3543295..3544197 (-) 903 WP_000115178.1 succinate--CoA ligase subunit alpha -
  ACNANF_RS17905 sucC 3544217..3545377 (-) 1161 WP_001020791.1 ADP-forming succinate--CoA ligase subunit beta -
  ACNANF_RS17910 - 3545572..3546345 (-) 774 WP_098212676.1 ribonuclease HII -
  ACNANF_RS17915 ylqF 3546402..3547292 (-) 891 WP_098212675.1 ribosome biogenesis GTPase YlqF -
  ACNANF_RS17920 lepB 3547313..3547864 (-) 552 WP_000711853.1 signal peptidase I -
  ACNANF_RS17925 rplS 3547966..3548310 (-) 345 WP_001186516.1 50S ribosomal protein L19 -
  ACNANF_RS17930 trmD 3548457..3549191 (-) 735 WP_000686903.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ACNANF_RS17935 rimM 3549191..3549706 (-) 516 WP_000170278.1 ribosome maturation factor RimM -
  ACNANF_RS17940 - 3549828..3550055 (-) 228 WP_000737401.1 KH domain-containing protein -
  ACNANF_RS17945 rpsP 3550070..3550342 (-) 273 WP_000268750.1 30S ribosomal protein S16 -
  ACNANF_RS17950 ffh 3550444..3551793 (-) 1350 WP_000863460.1 signal recognition particle protein -
  ACNANF_RS17955 - 3551806..3552138 (-) 333 WP_000891062.1 putative DNA-binding protein -
  ACNANF_RS17960 ftsY 3552272..3553261 (-) 990 WP_000007655.1 signal recognition particle-docking protein FtsY -
  ACNANF_RS17965 smc 3553277..3556846 (-) 3570 WP_000478973.1 chromosome segregation protein SMC -
  ACNANF_RS17970 rncS 3556993..3557730 (-) 738 WP_001146875.1 ribonuclease III -
  ACNANF_RS17975 acpP 3557789..3558022 (-) 234 WP_000786062.1 acyl carrier protein -
  ACNANF_RS17980 fabG 3558092..3558832 (-) 741 WP_098212674.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  ACNANF_RS17985 fabD 3558832..3559776 (-) 945 WP_000515899.1 ACP S-malonyltransferase -
  ACNANF_RS17990 plsX 3559791..3560783 (-) 993 WP_000684100.1 phosphate acyltransferase PlsX -
  ACNANF_RS17995 fapR 3560780..3561373 (-) 594 WP_000747348.1 transcription factor FapR -
  ACNANF_RS18000 recG 3561462..3563510 (-) 2049 WP_001000816.1 ATP-dependent DNA helicase RecG -
  ACNANF_RS18005 - 3563801..3565477 (-) 1677 WP_000027129.1 DAK2 domain-containing protein -
  ACNANF_RS18010 - 3565500..3565862 (-) 363 WP_000021109.1 Asp23/Gls24 family envelope stress response protein -
  ACNANF_RS18015 rpmB 3566239..3566427 (+) 189 WP_000124776.1 50S ribosomal protein L28 -
  ACNANF_RS18020 spoVM 3566501..3566581 (-) 81 WP_001213599.1 stage V sporulation protein SpoVM -
  ACNANF_RS18025 - 3566648..3567328 (-) 681 WP_002026234.1 thiamine diphosphokinase -
  ACNANF_RS18030 rpe 3567397..3568041 (-) 645 WP_000589974.1 ribulose-phosphate 3-epimerase -
  ACNANF_RS18035 rsgA 3568044..3568925 (-) 882 WP_001113932.1 ribosome small subunit-dependent GTPase A -
  ACNANF_RS18040 pknB 3569172..3571145 (-) 1974 WP_000904747.1 Stk1 family PASTA domain-containing Ser/Thr kinase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=1101187 ACNANF_RS17865 WP_000421290.1 3534940..3535719(-) (codY) [Bacillus cereus strain BSF-CH1]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1101187 ACNANF_RS17865 WP_000421290.1 3534940..3535719(-) (codY) [Bacillus cereus strain BSF-CH1]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment