Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACNVPQ_RS08430 Genome accession   NZ_CP182318
Coordinates   1655515..1656294 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain Scm3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1650515..1661294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNVPQ_RS08410 trmFO 1651202..1652509 (+) 1308 WP_094031705.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACNVPQ_RS08415 xerC 1652579..1653496 (+) 918 WP_032871470.1 tyrosine recombinase XerC -
  ACNVPQ_RS08420 hslV 1653512..1654057 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  ACNVPQ_RS08425 hslU 1654074..1655477 (+) 1404 WP_007409775.1 HslU--HslV peptidase ATPase subunit -
  ACNVPQ_RS08430 codY 1655515..1656294 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACNVPQ_RS08435 flgB 1656648..1657037 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  ACNVPQ_RS08440 flgC 1657037..1657489 (+) 453 WP_015239851.1 flagellar basal body rod protein FlgC -
  ACNVPQ_RS08445 fliE 1657500..1657820 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  ACNVPQ_RS08450 fliF 1657863..1659473 (+) 1611 WP_076424137.1 flagellar basal-body MS-ring/collar protein FliF -
  ACNVPQ_RS08455 fliG 1659486..1660502 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  ACNVPQ_RS08460 fliH 1660495..1661250 (+) 756 WP_015239852.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=1101120 ACNVPQ_RS08430 WP_003154263.1 1655515..1656294(+) (codY) [Bacillus velezensis strain Scm3]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1101120 ACNVPQ_RS08430 WP_003154263.1 1655515..1656294(+) (codY) [Bacillus velezensis strain Scm3]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACACTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment