Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   ACNJYY_RS14620 Genome accession   NZ_CP182294
Coordinates   2710473..2712803 (-) Length   776 a.a.
NCBI ID   WP_416729061.1    Uniprot ID   -
Organism   Fictibacillus sp. JL2B1089     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2705473..2717803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNJYY_RS14600 (ACNJYY_14600) alaS 2705480..2708116 (-) 2637 WP_416729059.1 alanine--tRNA ligase -
  ACNJYY_RS14605 (ACNJYY_14605) - 2708784..2709857 (-) 1074 WP_416729060.1 AI-2E family transporter -
  ACNJYY_RS14610 (ACNJYY_14610) - 2709913..2710092 (-) 180 WP_144698875.1 DUF3918 domain-containing protein -
  ACNJYY_RS14615 (ACNJYY_14615) - 2710128..2710325 (-) 198 WP_066240196.1 hypothetical protein -
  ACNJYY_RS14620 (ACNJYY_14620) recD2 2710473..2712803 (-) 2331 WP_416729061.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ACNJYY_RS14625 (ACNJYY_14625) - 2712816..2713475 (-) 660 WP_416729062.1 tetratricopeptide repeat protein -
  ACNJYY_RS14630 (ACNJYY_14630) mnmA 2713927..2715054 (-) 1128 WP_416729063.1 tRNA 2-thiouridine(34) synthase MnmA -
  ACNJYY_RS14635 (ACNJYY_14635) - 2715095..2716234 (-) 1140 WP_416729064.1 cysteine desulfurase family protein -
  ACNJYY_RS14640 (ACNJYY_14640) cymR 2716249..2716668 (-) 420 WP_144698865.1 cysteine metabolism transcriptional regulator CymR -
  ACNJYY_RS14645 (ACNJYY_14645) - 2716601..2717311 (-) 711 WP_416729065.1 YczE/YyaS/YitT family protein -

Sequence

Protein


Download         Length: 776 a.a.        Molecular weight: 88419.25 Da        Isoelectric Point: 6.0903

>NTDB_id=1101028 ACNJYY_RS14620 WP_416729061.1 2710473..2712803(-) (recD2) [Fictibacillus sp. JL2B1089]
MAQQPSFHLEDDSTELKKYIKGTLISTIYHQTESLYTVARIRVKETNENYNEKEIMITGILPPLREDELYVFYGKFKDHP
KYGKQYEVELFQKEMPQSKEAMIQYLSSDLFKGIGKKTAEHIVEVMGNDAITKLLESPEYISQIPKLTEEQAQSLQKSLM
QNRGLDQVMMVVQPYGIGPHLAMKIFQTYQDDAVKIIKDEPYRLIEDVSGIGFHRADEIAKGNGMQVNHPKRIQAACQFV
LRDQGTELGHSYLPMDQLLEGVRKLLADGKNTVDEMSIFREIQDMETEQRLIVKENVVYLPSLYFAERGFAQKMNQLLHS
QKNDYHIEDSKLESELAALEKRLNMKYAKSQKEAIKKALTSSLMVLTGGPGTGKTTVIKGIVELYSEIHGVSLNPDDYRG
KKESFPVLLVAPTGRAAKRMTESTGIPAHTIHRLLGWKGGGTFEKNEDEPIDGKLLIVDEMSMVDIWLAHSLAKALPSHI
QIIVVGDEDQLPSVGPGQVLKDLLQAQHVPQSRLVDIYRQAEGSSIIRLAHEMKNGNVPQDLLVPQNDRRFFACSGEQVF
QAILQVCENAIKKGYSSRDIQVLAPMYKGPVGIDRLNMELQRLFNPEKQKQRQLQVANVFYRKGDKVLQLVNQPEDQVFN
GDIGEIVAVIYARENTDKEDQIVISFDEIEVTYKRSEFHHFTHAFCCSIHKSQGSEYPIVVLPVLKSYYRMLKRNLLYTA
ITRSKEYLILCGEQEAFTWAVERSDETERYSGLTSLLQETILEKDLMNDTLLNETN

Nucleotide


Download         Length: 2331 bp        

>NTDB_id=1101028 ACNJYY_RS14620 WP_416729061.1 2710473..2712803(-) (recD2) [Fictibacillus sp. JL2B1089]
ATGGCACAGCAGCCTTCTTTTCATTTAGAAGATGATTCGACGGAATTAAAAAAGTATATAAAAGGTACGTTGATCTCTAC
AATTTATCATCAAACAGAGAGTCTCTATACGGTCGCTAGAATACGGGTAAAAGAGACGAACGAAAATTACAATGAAAAAG
AAATCATGATCACAGGCATCCTTCCTCCGTTAAGAGAAGATGAACTTTATGTGTTTTATGGAAAATTTAAAGATCATCCG
AAGTATGGTAAGCAATATGAGGTTGAACTATTTCAAAAAGAAATGCCTCAATCCAAGGAAGCGATGATTCAGTATCTTTC
GAGCGATCTGTTTAAAGGGATCGGTAAGAAGACTGCCGAGCATATTGTAGAAGTAATGGGAAACGATGCGATCACTAAGC
TCTTAGAATCACCGGAATATATCAGTCAGATTCCAAAGCTAACAGAAGAACAAGCACAAAGTTTGCAAAAATCCCTCATG
CAGAATCGAGGATTAGATCAAGTGATGATGGTGGTCCAACCCTATGGGATCGGACCTCATCTTGCGATGAAAATCTTTCA
AACGTATCAGGATGATGCTGTAAAGATCATTAAAGACGAGCCGTATCGACTGATCGAAGACGTTTCTGGAATTGGGTTTC
ACCGGGCTGATGAGATCGCAAAAGGAAATGGGATGCAAGTCAACCATCCAAAACGAATTCAAGCTGCTTGTCAGTTCGTG
CTTCGTGATCAAGGAACAGAGCTTGGACACTCATACCTTCCGATGGACCAACTGTTAGAAGGGGTAAGAAAGCTTTTAGC
AGATGGTAAGAATACGGTAGATGAGATGAGTATTTTTCGAGAGATTCAAGATATGGAGACTGAGCAGCGATTGATCGTAA
AAGAGAACGTTGTATACCTGCCATCCCTTTATTTCGCTGAGCGTGGATTTGCTCAAAAAATGAATCAATTATTACATAGT
CAGAAAAATGATTATCACATAGAGGATTCAAAATTGGAATCTGAGCTAGCAGCTCTTGAAAAAAGACTCAACATGAAGTA
TGCCAAAAGTCAAAAAGAGGCTATTAAGAAGGCGTTAACCTCTTCTTTAATGGTTCTGACAGGAGGACCTGGAACAGGGA
AAACGACCGTAATTAAAGGAATCGTCGAACTTTATAGTGAGATTCATGGCGTAAGTTTGAATCCAGATGATTACCGAGGA
AAGAAAGAGTCGTTTCCAGTTTTACTCGTTGCTCCAACAGGTCGAGCGGCAAAGCGTATGACCGAGTCTACAGGAATACC
CGCTCACACGATCCATCGCTTGTTAGGATGGAAAGGTGGAGGTACCTTTGAAAAAAATGAAGATGAACCCATTGACGGAA
AACTTTTGATCGTCGATGAAATGTCGATGGTCGACATATGGCTTGCTCATTCTTTAGCAAAAGCTCTGCCATCTCATATC
CAGATCATTGTTGTTGGGGATGAAGATCAGTTACCATCAGTTGGTCCTGGTCAAGTACTAAAAGATCTACTGCAAGCACA
GCATGTTCCACAATCTCGTTTAGTGGATATTTATAGACAGGCAGAAGGATCATCTATTATCCGGTTAGCTCATGAGATGA
AGAACGGAAACGTGCCTCAAGATCTGCTTGTCCCACAGAACGACAGACGTTTTTTTGCATGTTCCGGTGAACAAGTGTTT
CAAGCTATCCTTCAAGTTTGTGAAAATGCGATTAAAAAAGGATACAGTTCTCGAGATATTCAAGTGTTAGCACCTATGTA
CAAAGGGCCTGTTGGAATTGATCGATTAAATATGGAACTTCAGCGTCTGTTTAATCCGGAGAAACAAAAACAGCGTCAGT
TACAGGTGGCAAATGTGTTTTATCGAAAAGGAGATAAAGTGCTTCAGCTCGTCAATCAACCTGAAGATCAGGTGTTCAAT
GGTGATATCGGTGAGATCGTTGCTGTTATCTATGCAAGAGAGAACACGGATAAAGAAGATCAGATCGTCATCAGTTTTGA
TGAGATTGAGGTAACGTATAAAAGAAGTGAATTTCATCACTTTACTCATGCTTTCTGCTGTTCGATCCATAAATCGCAGG
GAAGTGAGTATCCGATCGTCGTTCTGCCTGTCTTAAAAAGCTACTACCGAATGTTAAAACGGAACTTATTATATACTGCA
ATAACGAGAAGTAAAGAATATCTGATCCTGTGTGGAGAACAAGAAGCGTTTACTTGGGCTGTTGAACGATCAGATGAAAC
AGAACGATACTCGGGTCTTACTTCCCTACTTCAAGAGACCATACTGGAAAAAGATTTAATGAATGATACCCTTCTAAACG
AAACAAACTAG

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(596-666)

Helix-hairpin-helix containing domain (HHH_RecD2)

(162-252)

AAA domain (AAA_30)

(347-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.52

97.165

0.51

Multiple sequence alignment