Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACM9DY_RS08150 Genome accession   NZ_CP182170
Coordinates   1607542..1608321 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain F3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1602542..1613321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM9DY_RS08130 (ACM9DY_08130) trmFO 1603229..1604536 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACM9DY_RS08135 (ACM9DY_08135) xerC 1604606..1605523 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  ACM9DY_RS08140 (ACM9DY_08140) hslV 1605539..1606084 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  ACM9DY_RS08145 (ACM9DY_08145) hslU 1606101..1607504 (+) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  ACM9DY_RS08150 (ACM9DY_08150) codY 1607542..1608321 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACM9DY_RS08155 (ACM9DY_08155) flgB 1608675..1609064 (+) 390 WP_095318220.1 flagellar basal body rod protein FlgB -
  ACM9DY_RS08160 (ACM9DY_08160) flgC 1609064..1609516 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  ACM9DY_RS08165 (ACM9DY_08165) fliE 1609527..1609847 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  ACM9DY_RS08170 (ACM9DY_08170) fliF 1609890..1611500 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  ACM9DY_RS08175 (ACM9DY_08175) fliG 1611513..1612529 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  ACM9DY_RS08180 (ACM9DY_08180) fliH 1612522..1613277 (+) 756 WP_032856803.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=1100689 ACM9DY_RS08150 WP_003154263.1 1607542..1608321(+) (codY) [Bacillus velezensis strain F3]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1100689 ACM9DY_RS08150 WP_003154263.1 1607542..1608321(+) (codY) [Bacillus velezensis strain F3]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCTCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCTCTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment