Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABXS94_RS12550 Genome accession   NZ_AP031566
Coordinates   2607881..2608324 (-) Length   147 a.a.
NCBI ID   WP_180051417.1    Uniprot ID   -
Organism   Acinetobacter towneri strain PT23-B2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2602881..2613324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXS94_RS12520 (PT23B2_24190) - 2603437..2604354 (+) 918 WP_257222696.1 triacylglycerol lipase -
  ABXS94_RS12525 (PT23B2_24200) - 2604534..2605502 (+) 969 WP_353675248.1 triacylglycerol lipase -
  ABXS94_RS12530 (PT23B2_24210) rplS 2605571..2605942 (-) 372 WP_004974529.1 50S ribosomal protein L19 -
  ABXS94_RS12535 (PT23B2_24220) trmD 2606116..2606865 (-) 750 WP_154320275.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ABXS94_RS12540 (PT23B2_24230) rimM 2606908..2607456 (-) 549 WP_225530378.1 ribosome maturation factor RimM -
  ABXS94_RS12545 (PT23B2_24240) rpsP 2607485..2607742 (-) 258 WP_131260619.1 30S ribosomal protein S16 -
  ABXS94_RS12550 (PT23B2_24250) comF 2607881..2608324 (-) 444 WP_180051417.1 type IV pilin protein Machinery gene
  ABXS94_RS12555 (PT23B2_24260) - 2608311..2608850 (-) 540 WP_180051416.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ABXS94_RS12560 (PT23B2_24270) - 2608860..2613290 (-) 4431 WP_353675249.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 15911.05 Da        Isoelectric Point: 8.4686

>NTDB_id=110012 ABXS94_RS12550 WP_180051417.1 2607881..2608324(-) (comF) [Acinetobacter towneri strain PT23-B2]
MRVGNHENGFTLIELMIVVAVIAILAAIALPSYNSYKVRANRVEVQTELMQLAQRLQSYKAMNHSYRNATLASIGGSGTF
PSHQALYNIDLVIDASNQAYVLSALPTSTGAQKGNGGLSLDQTGRQCWFKGKDSPVATDTCSTWSDK

Nucleotide


Download         Length: 444 bp        

>NTDB_id=110012 ABXS94_RS12550 WP_180051417.1 2607881..2608324(-) (comF) [Acinetobacter towneri strain PT23-B2]
ATGAGAGTTGGTAATCATGAAAACGGATTTACACTAATTGAACTGATGATTGTTGTTGCTGTCATAGCTATTTTGGCTGC
AATCGCTTTGCCTTCTTATAATAGTTATAAAGTACGTGCTAATCGTGTAGAAGTTCAAACTGAATTAATGCAACTGGCAC
AGCGTTTACAAAGCTATAAGGCAATGAATCACAGTTATAGAAATGCGACATTGGCGAGTATTGGAGGAAGCGGTACGTTT
CCAAGTCATCAAGCTTTATATAATATTGATTTGGTAATTGACGCATCTAATCAAGCATACGTGTTATCTGCCTTACCTAC
TTCTACAGGGGCACAGAAAGGGAATGGCGGCTTGAGCCTCGATCAAACAGGGCGACAATGCTGGTTTAAAGGTAAAGATT
CACCTGTAGCAACAGACACTTGTTCTACCTGGTCTGACAAATAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(31-112)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

49.324

100

0.497
  pilE Acinetobacter baumannii D1279779

43.662

96.599

0.422

Multiple sequence alignment