Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACMS1Y_RS07990 Genome accession   NZ_CP181431
Coordinates   1593084..1593863 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus safensis strain BS22LVI     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1588084..1598863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMS1Y_RS07970 trmFO 1588788..1590092 (+) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACMS1Y_RS07975 xerC 1590155..1591072 (+) 918 WP_024424182.1 tyrosine recombinase XerC -
  ACMS1Y_RS07980 hslV 1591087..1591632 (+) 546 WP_024424181.1 ATP-dependent protease subunit HslV -
  ACMS1Y_RS07985 hslU 1591649..1593049 (+) 1401 WP_024424180.1 HslU--HslV peptidase ATPase subunit -
  ACMS1Y_RS07990 codY 1593084..1593863 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACMS1Y_RS07995 flgB 1594152..1594541 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  ACMS1Y_RS08000 flgC 1594541..1594993 (+) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  ACMS1Y_RS08005 fliE 1595005..1595322 (+) 318 WP_025092577.1 flagellar hook-basal body complex protein FliE -
  ACMS1Y_RS08010 fliF 1595372..1596964 (+) 1593 WP_024424177.1 flagellar basal-body MS-ring/collar protein FliF -
  ACMS1Y_RS08015 fliG 1596976..1597992 (+) 1017 WP_024424176.1 flagellar motor switch protein FliG -
  ACMS1Y_RS08020 fliH 1597985..1598749 (+) 765 WP_415316235.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=1100095 ACMS1Y_RS07990 WP_007499612.1 1593084..1593863(+) (codY) [Bacillus safensis strain BS22LVI]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1100095 ACMS1Y_RS07990 WP_007499612.1 1593084..1593863(+) (codY) [Bacillus safensis strain BS22LVI]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTCAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGAAAGCTTCTTGGCTACTCCATTA
ATCAACAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AATGTCCCTGAAACGTCTTCAAACCTTGATATTAACAGTGAATATACAGCTTTTCCGATTGAAAACCGGGACTTATTCCA
ATCAGGTTTAACAACAATTGTTCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGCTTACAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGGGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATTAGCTCTCTTTCCTACAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTGGATGGAAACGAAGGTCTTCTCGTTGCAAGTAAAATTGCAGACCGTGTAGGGATCACGC
GCTCAGTGATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTGATTGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment