Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | ACLQ7P_RS13540 | Genome accession | NZ_CP181322 |
| Coordinates | 2502120..2502899 (-) | Length | 259 a.a. |
| NCBI ID | WP_003220850.1 | Uniprot ID | G4NSM6 |
| Organism | Bacillus subtilis subsp. subtilis strain JCK-1398 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2493300..2543273 | 2502120..2502899 | within | 0 |
Gene organization within MGE regions
Location: 2493300..2543273
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLQ7P_RS13490 (ACLQ7P_13490) | fliK | 2493331..2494794 (-) | 1464 | WP_326121315.1 | flagellar hook-length control protein FliK | - |
| ACLQ7P_RS13495 (ACLQ7P_13495) | ylxF | 2494807..2495421 (-) | 615 | WP_121591797.1 | MotE family protein | - |
| ACLQ7P_RS13500 (ACLQ7P_13500) | fliJ | 2495433..2495876 (-) | 444 | WP_003231977.1 | flagellar export protein FliJ | - |
| ACLQ7P_RS13505 (ACLQ7P_13505) | fliI | 2495879..2497195 (-) | 1317 | WP_121591796.1 | flagellar protein export ATPase FliI | - |
| ACLQ7P_RS13510 (ACLQ7P_13510) | fliH | 2497192..2497944 (-) | 753 | WP_172843761.1 | flagellar assembly protein FliH | - |
| ACLQ7P_RS13515 (ACLQ7P_13515) | fliG | 2497937..2498899 (-) | 963 | WP_416247043.1 | flagellar motor switch protein FliG | - |
| ACLQ7P_RS13520 (ACLQ7P_13520) | fliF | 2498912..2500522 (-) | 1611 | WP_072557157.1 | flagellar basal-body MS-ring/collar protein FliF | - |
| ACLQ7P_RS13525 (ACLQ7P_13525) | fliE | 2500568..2500888 (-) | 321 | WP_003238544.1 | flagellar hook-basal body complex protein FliE | - |
| ACLQ7P_RS13530 (ACLQ7P_13530) | flgC | 2500899..2501351 (-) | 453 | WP_416247655.1 | flagellar basal body rod protein FlgC | - |
| ACLQ7P_RS13535 (ACLQ7P_13535) | flgB | 2501351..2501740 (-) | 390 | WP_041335963.1 | flagellar basal body rod protein FlgB | - |
| ACLQ7P_RS13540 (ACLQ7P_13540) | codY | 2502120..2502899 (-) | 780 | WP_003220850.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| ACLQ7P_RS13545 (ACLQ7P_13545) | hslU | 2502939..2504342 (-) | 1404 | WP_003245556.1 | HslU--HslV peptidase ATPase subunit | - |
| ACLQ7P_RS13550 (ACLQ7P_13550) | clpQ | 2504359..2504904 (-) | 546 | WP_003238555.1 | ATP-dependent protease subunit ClpQ | - |
| ACLQ7P_RS13555 (ACLQ7P_13555) | xerC | 2504917..2505831 (-) | 915 | WP_003231988.1 | tyrosine recombinase XerC | - |
| ACLQ7P_RS13560 (ACLQ7P_13560) | trmFO | 2505899..2507206 (-) | 1308 | WP_416247044.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| ACLQ7P_RS13565 (ACLQ7P_13565) | topA | 2507282..2509357 (-) | 2076 | WP_416247045.1 | type I DNA topoisomerase | - |
| ACLQ7P_RS13570 (ACLQ7P_13570) | dprA | 2509545..2510438 (-) | 894 | WP_041057474.1 | DNA-processing protein DprA | Machinery gene |
| ACLQ7P_RS13575 (ACLQ7P_13575) | sucD | 2510499..2511401 (-) | 903 | WP_003238566.1 | succinate--CoA ligase subunit alpha | - |
| ACLQ7P_RS13580 (ACLQ7P_13580) | sucC | 2511430..2512587 (-) | 1158 | WP_014663957.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| ACLQ7P_RS13585 (ACLQ7P_13585) | ylqH | 2512760..2513041 (-) | 282 | WP_041057471.1 | FlhB-like flagellar biosynthesis protein | - |
| ACLQ7P_RS13590 (ACLQ7P_13590) | - | 2513038..2514768 (-) | 1731 | WP_088272319.1 | hypothetical protein | - |
| ACLQ7P_RS13595 (ACLQ7P_13595) | rnhB | 2514800..2515567 (-) | 768 | WP_069837507.1 | ribonuclease HII | - |
| ACLQ7P_RS13600 (ACLQ7P_13600) | ylqF | 2515638..2516486 (-) | 849 | WP_003232007.1 | ribosome biogenesis GTPase YlqF | - |
| ACLQ7P_RS13605 (ACLQ7P_13605) | rplS | 2516629..2516976 (-) | 348 | WP_003220825.1 | 50S ribosomal protein L19 | - |
| ACLQ7P_RS13610 (ACLQ7P_13610) | trmD | 2517116..2517847 (-) | 732 | WP_069837506.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| ACLQ7P_RS13615 (ACLQ7P_13615) | rimM | 2517844..2518368 (-) | 525 | WP_064671375.1 | ribosome maturation factor RimM | - |
| ACLQ7P_RS13620 (ACLQ7P_13620) | ylqD | 2518373..2518759 (-) | 387 | WP_014476793.1 | YlqD family protein | - |
| ACLQ7P_RS13625 (ACLQ7P_13625) | khpA | 2518881..2519126 (-) | 246 | WP_014476792.1 | KH domain-containing protein | - |
| ACLQ7P_RS13630 (ACLQ7P_13630) | rpsP | 2519126..2519398 (-) | 273 | WP_003220815.1 | 30S ribosomal protein S16 | - |
| ACLQ7P_RS13635 (ACLQ7P_13635) | ffh | 2519504..2520844 (-) | 1341 | WP_003220811.1 | signal recognition particle protein | - |
| ACLQ7P_RS13640 (ACLQ7P_13640) | srpM | 2520858..2521190 (-) | 333 | WP_003238590.1 | putative DNA-binding protein | - |
| ACLQ7P_RS13645 (ACLQ7P_13645) | - | 2521321..2522092 (-) | 772 | Protein_2640 | phosphotransferase family protein | - |
| ACLQ7P_RS13650 (ACLQ7P_13650) | ftsY | 2522177..2523166 (-) | 990 | WP_014663946.1 | signal recognition particle-docking protein FtsY | - |
| ACLQ7P_RS13655 (ACLQ7P_13655) | smc | 2523186..2526746 (-) | 3561 | WP_416247046.1 | chromosome segregation protein SMC | - |
| ACLQ7P_RS13660 (ACLQ7P_13660) | rncS | 2526847..2527596 (-) | 750 | WP_003232030.1 | ribonuclease III | - |
| ACLQ7P_RS13665 (ACLQ7P_13665) | acpP | 2527736..2527969 (-) | 234 | WP_003154310.1 | acyl carrier protein | - |
| ACLQ7P_RS13670 (ACLQ7P_13670) | fabG | 2528053..2528793 (-) | 741 | WP_416247047.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| ACLQ7P_RS13675 (ACLQ7P_13675) | fabD | 2528786..2529739 (-) | 954 | WP_416247048.1 | ACP S-malonyltransferase | - |
| ACLQ7P_RS13680 (ACLQ7P_13680) | plsX | 2529758..2530759 (-) | 1002 | WP_163117343.1 | phosphate acyltransferase PlsX | - |
| ACLQ7P_RS13685 (ACLQ7P_13685) | fapR | 2530773..2531339 (-) | 567 | WP_003232044.1 | transcription factor FapR | - |
| ACLQ7P_RS13690 (ACLQ7P_13690) | recG | 2531448..2533496 (-) | 2049 | WP_269767428.1 | ATP-dependent DNA helicase RecG | - |
| ACLQ7P_RS13695 (ACLQ7P_13695) | sdaAA | 2533474..2534376 (-) | 903 | WP_269767429.1 | L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha | - |
| ACLQ7P_RS13700 (ACLQ7P_13700) | sdaAB | 2534401..2535063 (-) | 663 | WP_003232050.1 | L-serine ammonia-lyase, iron-sulfur-dependent subunit beta | - |
| ACLQ7P_RS13705 (ACLQ7P_13705) | fakA | 2535202..2536863 (-) | 1662 | WP_041335949.1 | DAK2 domain-containing protein | - |
| ACLQ7P_RS13710 (ACLQ7P_13710) | yloU | 2536879..2537241 (-) | 363 | WP_003232054.1 | Asp23/Gls24 family envelope stress response protein | - |
| ACLQ7P_RS13715 (ACLQ7P_13715) | rpmB | 2537518..2537706 (+) | 189 | WP_003221548.1 | 50S ribosomal protein L28 | - |
| ACLQ7P_RS13720 (ACLQ7P_13720) | spoVM | 2537779..2537859 (-) | 81 | WP_003221545.1 | stage V sporulation protein SpoVM | - |
| ACLQ7P_RS13725 (ACLQ7P_13725) | thiN | 2537931..2538575 (-) | 645 | WP_017694853.1 | thiamine diphosphokinase | - |
| ACLQ7P_RS13730 (ACLQ7P_13730) | rpe | 2538648..2539301 (-) | 654 | WP_003232058.1 | ribulose-phosphate 3-epimerase | - |
| ACLQ7P_RS13735 (ACLQ7P_13735) | rsgA | 2539306..2540202 (-) | 897 | WP_003232060.1 | ribosome small subunit-dependent GTPase A | - |
| ACLQ7P_RS13740 (ACLQ7P_13740) | prkC | 2540217..2542163 (-) | 1947 | WP_017694852.1 | serine/threonine protein kinase PrkC | - |
| ACLQ7P_RS13745 (ACLQ7P_13745) | prpC | 2542157..2542921 (-) | 765 | WP_014479762.1 | protein-serine/threonine phosphatase PrpC | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 29013.22 Da Isoelectric Point: 4.6514
>NTDB_id=1099711 ACLQ7P_RS13540 WP_003220850.1 2502120..2502899(-) (codY) [Bacillus subtilis subsp. subtilis strain JCK-1398]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH
Nucleotide
Download Length: 780 bp
>NTDB_id=1099711 ACLQ7P_RS13540 WP_003220850.1 2502120..2502899(-) (codY) [Bacillus subtilis subsp. subtilis strain JCK-1398]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTCATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTCATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
47.451 |
98.456 |
0.467 |