Detailed information
Bioinformatically predicted
Overview
| Name | xcpW | Type | Machinery gene |
| Locus tag | ACM660_RS08990 | Genome accession | NZ_CP181170 |
| Coordinates | 1908157..1908801 (+) | Length | 214 a.a. |
| NCBI ID | WP_416178173.1 | Uniprot ID | - |
| Organism | Acinetobacter sp. SEK541 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1903767..1946116 | 1908157..1908801 | within | 0 |
Gene organization within MGE regions
Location: 1903767..1946116
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACM660_RS08955 (ACM660_08955) | - | 1903878..1904387 (+) | 510 | WP_032811637.1 | lipoprotein | - |
| ACM660_RS08960 (ACM660_08960) | - | 1904442..1904945 (-) | 504 | WP_005204213.1 | hypothetical protein | - |
| ACM660_RS08965 (ACM660_08965) | - | 1905282..1905626 (+) | 345 | WP_004806631.1 | PilZ domain-containing protein | - |
| ACM660_RS08970 (ACM660_08970) | - | 1905651..1906424 (+) | 774 | WP_005204211.1 | TatD family hydrolase | - |
| ACM660_RS08975 (ACM660_08975) | - | 1906466..1907074 (+) | 609 | WP_017401929.1 | TetR/AcrR family transcriptional regulator | - |
| ACM660_RS08980 (ACM660_08980) | - | 1907086..1907634 (+) | 549 | WP_005204208.1 | pilus assembly FimT family protein | - |
| ACM660_RS08985 (ACM660_08985) | xcpV | 1907807..1908160 (+) | 354 | WP_005204206.1 | type II secretion system protein | Machinery gene |
| ACM660_RS08990 (ACM660_08990) | xcpW | 1908157..1908801 (+) | 645 | WP_416178173.1 | type II secretion system protein GspJ | Machinery gene |
| ACM660_RS08995 (ACM660_08995) | gspK | 1908850..1909886 (+) | 1037 | Protein_1751 | type II secretion system minor pseudopilin GspK | - |
| ACM660_RS09000 (ACM660_09000) | - | 1909995..1910595 (+) | 601 | Protein_1752 | 6-pyruvoyl trahydropterin synthase family protein | - |
| ACM660_RS09005 (ACM660_09005) | ung | 1910640..1911353 (+) | 714 | WP_004806648.1 | uracil-DNA glycosylase | - |
| ACM660_RS09010 (ACM660_09010) | - | 1911350..1912474 (+) | 1125 | WP_171061051.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ACM660_RS09015 (ACM660_09015) | tadA | 1912480..1912989 (+) | 510 | WP_005204195.1 | tRNA adenosine(34) deaminase TadA | - |
| ACM660_RS09020 (ACM660_09020) | - | 1913056..1913496 (+) | 441 | WP_005204193.1 | SRPBCC family protein | - |
| ACM660_RS09025 (ACM660_09025) | cmk | 1913506..1914186 (+) | 681 | WP_005204192.1 | (d)CMP kinase | - |
| ACM660_RS09030 (ACM660_09030) | rpsA | 1914301..1915983 (+) | 1683 | WP_004806660.1 | 30S ribosomal protein S1 | - |
| ACM660_RS09035 (ACM660_09035) | - | 1916141..1916443 (+) | 303 | WP_004806663.1 | integration host factor subunit beta | - |
| ACM660_RS09040 (ACM660_09040) | - | 1916458..1916823 (+) | 366 | WP_004806665.1 | lipopolysaccharide assembly protein LapA domain-containing protein | - |
| ACM660_RS09045 (ACM660_09045) | - | 1916907..1917233 (-) | 327 | WP_005204189.1 | AzlD domain-containing protein | - |
| ACM660_RS09050 (ACM660_09050) | - | 1917230..1917886 (-) | 657 | WP_017401926.1 | AzlC family ABC transporter permease | - |
| ACM660_RS09055 (ACM660_09055) | - | 1917976..1918524 (+) | 549 | WP_005188020.1 | helix-turn-helix domain-containing protein | - |
| ACM660_RS09060 (ACM660_09060) | pyrF | 1918638..1919318 (+) | 681 | WP_005204183.1 | orotidine-5'-phosphate decarboxylase | - |
| ACM660_RS09065 (ACM660_09065) | - | 1919331..1919909 (-) | 579 | Protein_1765 | lysine exporter LysO family protein | - |
| ACM660_RS09070 (ACM660_09070) | - | 1920020..1920988 (+) | 969 | WP_014538385.1 | IS30 family transposase | - |
| ACM660_RS09075 (ACM660_09075) | - | 1920994..1921338 (-) | 345 | Protein_1767 | hypothetical protein | - |
| ACM660_RS09080 (ACM660_09080) | - | 1921579..1922148 (+) | 570 | WP_004806677.1 | TetR/AcrR family transcriptional regulator | - |
| ACM660_RS09085 (ACM660_09085) | - | 1922177..1923403 (-) | 1227 | WP_005204176.1 | multidrug effflux MFS transporter | - |
| ACM660_RS09090 (ACM660_09090) | - | 1923604..1925118 (-) | 1515 | WP_005204174.1 | flavin-containing monooxygenase | - |
| ACM660_RS09095 (ACM660_09095) | - | 1925274..1926293 (+) | 1020 | WP_004806683.1 | AraC family transcriptional regulator | - |
| ACM660_RS09100 (ACM660_09100) | zapE | 1926412..1927557 (+) | 1146 | WP_004806685.1 | cell division protein ZapE | - |
| ACM660_RS09105 (ACM660_09105) | - | 1927846..1930008 (+) | 2163 | WP_005153408.1 | malate synthase G | - |
| ACM660_RS09110 (ACM660_09110) | - | 1930193..1930813 (+) | 621 | WP_005204107.1 | 2OG-Fe(II) oxygenase | - |
| ACM660_RS09115 (ACM660_09115) | - | 1930890..1931552 (+) | 663 | WP_005204106.1 | SOS response-associated peptidase | - |
| ACM660_RS09120 (ACM660_09120) | - | 1931619..1932083 (-) | 465 | WP_004653790.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| ACM660_RS09125 (ACM660_09125) | - | 1932784..1933641 (-) | 858 | WP_005204105.1 | alpha/beta fold hydrolase | - |
| ACM660_RS09130 (ACM660_09130) | - | 1933777..1934232 (+) | 456 | WP_005204104.1 | hypothetical protein | - |
| ACM660_RS09135 (ACM660_09135) | - | 1934244..1934504 (-) | 261 | WP_005204103.1 | hypothetical protein | - |
| ACM660_RS09140 (ACM660_09140) | brnQ | 1934919..1936220 (-) | 1302 | WP_005204102.1 | branched-chain amino acid transport system II carrier protein | - |
| ACM660_RS09145 (ACM660_09145) | map | 1936580..1937374 (+) | 795 | WP_005204101.1 | type I methionyl aminopeptidase | - |
| ACM660_RS09150 (ACM660_09150) | - | 1937401..1938321 (-) | 921 | WP_005204100.1 | LysR family transcriptional regulator | - |
| ACM660_RS09155 (ACM660_09155) | - | 1938377..1938805 (-) | 429 | WP_005204099.1 | hypothetical protein | - |
| ACM660_RS09160 (ACM660_09160) | - | 1938885..1939208 (+) | 324 | WP_005204097.1 | hypothetical protein | - |
| ACM660_RS09165 (ACM660_09165) | grxD | 1939260..1939601 (-) | 342 | WP_004639270.1 | Grx4 family monothiol glutaredoxin | - |
| ACM660_RS09170 (ACM660_09170) | - | 1939765..1940979 (+) | 1215 | WP_005204095.1 | aspartate aminotransferase family protein | - |
| ACM660_RS09175 (ACM660_09175) | - | 1941037..1941468 (-) | 432 | WP_005204092.1 | CBS domain-containing protein | - |
| ACM660_RS09180 (ACM660_09180) | - | 1941607..1941984 (-) | 378 | WP_004806719.1 | DUF2750 domain-containing protein | - |
| ACM660_RS09185 (ACM660_09185) | - | 1942196..1942429 (-) | 234 | WP_004653777.1 | hypothetical protein | - |
| ACM660_RS09190 (ACM660_09190) | - | 1942656..1943015 (+) | 360 | WP_004806721.1 | hypothetical protein | - |
| ACM660_RS09195 (ACM660_09195) | - | 1943127..1943456 (+) | 330 | WP_004806727.1 | hypothetical protein | - |
| ACM660_RS09200 (ACM660_09200) | ftsY | 1943575..1944693 (+) | 1119 | WP_005204090.1 | signal recognition particle-docking protein FtsY | - |
| ACM660_RS09205 (ACM660_09205) | - | 1944876..1945472 (+) | 597 | WP_005204088.1 | nitroreductase family protein | - |
| ACM660_RS09210 (ACM660_09210) | - | 1945866..1946066 (+) | 201 | WP_004806733.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 214 a.a. Molecular weight: 24632.23 Da Isoelectric Point: 7.3889
>NTDB_id=1099387 ACM660_RS08990 WP_416178173.1 1908157..1908801(+) (xcpW) [Acinetobacter sp. SEK541]
MKYNAEHRFSPHSGFTLVELLVAIAIFAVLSMLGWKVFDYYLLKVKDRNAEHEMHLFALQDAYQQVLRDSLQIIPLTAND
GRQLQAAIVLNDQSFSFSKAGVSDPLKQGLSPYERIEYRYDSAQKKVYRLKYSNLNIPNRVQPISSTLLENVDQFKVLVL
NPQELTQWPENSDPSNIAELKKLPLGIKIQLTVAGTDYEWIYSLLNTQAYIYSR
MKYNAEHRFSPHSGFTLVELLVAIAIFAVLSMLGWKVFDYYLLKVKDRNAEHEMHLFALQDAYQQVLRDSLQIIPLTAND
GRQLQAAIVLNDQSFSFSKAGVSDPLKQGLSPYERIEYRYDSAQKKVYRLKYSNLNIPNRVQPISSTLLENVDQFKVLVL
NPQELTQWPENSDPSNIAELKKLPLGIKIQLTVAGTDYEWIYSLLNTQAYIYSR
Nucleotide
Download Length: 645 bp
>NTDB_id=1099387 ACM660_RS08990 WP_416178173.1 1908157..1908801(+) (xcpW) [Acinetobacter sp. SEK541]
ATGAAATATAATGCTGAGCATCGCTTTTCGCCTCACTCTGGCTTTACCTTGGTTGAGTTGTTGGTTGCAATTGCGATTTT
TGCCGTGCTTTCGATGCTGGGGTGGAAGGTCTTTGATTATTATCTATTAAAAGTAAAAGATCGTAATGCTGAGCATGAAA
TGCATCTATTTGCTTTGCAAGATGCATATCAACAAGTGTTAAGAGATAGCTTGCAGATTATTCCATTGACAGCAAATGAT
GGAAGGCAGTTGCAAGCAGCTATTGTATTGAATGATCAAAGTTTTTCATTTAGTAAGGCTGGTGTTTCTGATCCATTGAA
GCAGGGACTATCACCTTATGAGCGTATTGAATATCGCTATGATTCTGCACAGAAGAAAGTGTATCGATTGAAATACTCAA
ATCTCAATATCCCGAATCGTGTGCAACCGATATCAAGTACATTGTTGGAAAATGTAGATCAGTTTAAAGTGCTGGTTTTG
AACCCGCAAGAATTGACACAGTGGCCTGAGAATAGTGACCCGAGCAATATTGCTGAACTTAAAAAATTACCGCTAGGCAT
AAAAATACAGTTAACTGTTGCAGGCACGGACTATGAATGGATCTATAGTTTATTGAATACTCAGGCATATATTTACAGTC
GATAG
ATGAAATATAATGCTGAGCATCGCTTTTCGCCTCACTCTGGCTTTACCTTGGTTGAGTTGTTGGTTGCAATTGCGATTTT
TGCCGTGCTTTCGATGCTGGGGTGGAAGGTCTTTGATTATTATCTATTAAAAGTAAAAGATCGTAATGCTGAGCATGAAA
TGCATCTATTTGCTTTGCAAGATGCATATCAACAAGTGTTAAGAGATAGCTTGCAGATTATTCCATTGACAGCAAATGAT
GGAAGGCAGTTGCAAGCAGCTATTGTATTGAATGATCAAAGTTTTTCATTTAGTAAGGCTGGTGTTTCTGATCCATTGAA
GCAGGGACTATCACCTTATGAGCGTATTGAATATCGCTATGATTCTGCACAGAAGAAAGTGTATCGATTGAAATACTCAA
ATCTCAATATCCCGAATCGTGTGCAACCGATATCAAGTACATTGTTGGAAAATGTAGATCAGTTTAAAGTGCTGGTTTTG
AACCCGCAAGAATTGACACAGTGGCCTGAGAATAGTGACCCGAGCAATATTGCTGAACTTAAAAAATTACCGCTAGGCAT
AAAAATACAGTTAACTGTTGCAGGCACGGACTATGAATGGATCTATAGTTTATTGAATACTCAGGCATATATTTACAGTC
GATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpW | Acinetobacter baumannii D1279779 |
73.232 |
92.523 |
0.678 |