Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   ACM1TL_RS10405 Genome accession   NZ_CP181080
Coordinates   2010133..2012565 (-) Length   810 a.a.
NCBI ID   WP_416141873.1    Uniprot ID   -
Organism   Lysinibacillus capsici strain S2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2005133..2017565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM1TL_RS10395 (ACM1TL_10395) corA 2007141..2008106 (-) 966 WP_066036480.1 magnesium/cobalt transporter CorA -
  ACM1TL_RS10400 (ACM1TL_10400) hpaB 2008576..2010009 (-) 1434 WP_054550061.1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component -
  ACM1TL_RS10405 (ACM1TL_10405) recD2 2010133..2012565 (-) 2433 WP_416141873.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ACM1TL_RS10410 (ACM1TL_10410) hisA 2012755..2013522 (+) 768 WP_048392137.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase -
  ACM1TL_RS10415 (ACM1TL_10415) - 2013519..2013806 (+) 288 WP_048392136.1 hypothetical protein -
  ACM1TL_RS10420 (ACM1TL_10420) - 2014586..2015335 (+) 750 WP_048392669.1 GTP pyrophosphokinase -
  ACM1TL_RS10425 (ACM1TL_10425) - 2015425..2016870 (-) 1446 WP_387255445.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 90773.14 Da        Isoelectric Point: 4.8070

>NTDB_id=1098045 ACM1TL_RS10405 WP_416141873.1 2010133..2012565(-) (recD2) [Lysinibacillus capsici strain S2]
MTDHLDLFELNKFFILGRPIVSIFHNAQNMYSIVRVKIQETNLQYEDKEIIVVGYFPPLQMDEQYRFTGILKQHPKYGAQ
FQIETFTKEVPATEQGIIHYLSSDLFVGIGKKTAETIVEKLGANALRVILEDPSALDAVPRLSAEKKEVIHRTIEQNLGL
ERVMIQLNEWGFGPQLGMKIYQTYRTEAIELLTENPYRLIEDVEGVGFFRADELGAKLGITGKHPDRVKAAILHILNTAA
LSDGHVYLDAEQVLPLVKEMLEQSQRQEIPFEDISQACIRLREEGKICGEETRLYLPSLYFSEVGIASKILSLIERNNKA
EHFSKDEIRKAIGETEELLNVTYAETQANAIEQALNSAVMILTGGPGTGKTTVVRGVVEVYAKLHGLSLNPKEYAQKEEP
FPIILCAPTGRAAKRLAESTELPAMTIHRLLGFTGQEKEEETEREVTGKLIIVDEMSMVDTWLAHQLLKALHEDVQVVFV
GDQDQLPPVGPGQVLKDLLASKQLPTVELTDVYRQAEGSTIIELAHQIKKGTIPQELTAKTSDRSFIKASADQVANVVTQ
VVKSAVAKGQEIRNIQVLAPMYKGTAGIDNLNKMIQELINPNDTGTRKELVFGDVTYRIKDKVLQLVNQPESNVFNGDMG
EVISIIKAKETIEKQDLLIVSFDGIEVTYQRSDLNQLTLAYCCSIHKSQGSEFQTVIMPVVRGYSKMLRRNLLYTGITRA
KNFLILCGEPDVLADGLQRTDDLQRFTSLRARLNPMEIEEELVEVEAVPVENEGMQEPVSVEPKLTVETAPYIHPMIGMN
DVSPYDFLDD

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=1098045 ACM1TL_RS10405 WP_416141873.1 2010133..2012565(-) (recD2) [Lysinibacillus capsici strain S2]
ATGACAGATCATTTAGATTTATTTGAACTCAATAAATTTTTTATACTCGGACGTCCGATCGTCTCTATCTTTCATAATGC
GCAAAATATGTATTCGATTGTACGTGTGAAAATTCAAGAGACAAATTTGCAATATGAAGATAAAGAGATTATTGTTGTTG
GTTATTTTCCCCCACTACAAATGGATGAACAATATCGATTTACTGGTATTTTAAAACAGCATCCTAAATACGGTGCTCAA
TTTCAAATTGAGACATTTACAAAAGAGGTACCTGCAACTGAGCAAGGAATTATTCATTATTTATCTAGTGACCTCTTCGT
AGGGATCGGGAAAAAAACAGCTGAAACGATTGTTGAAAAACTAGGTGCTAATGCACTCCGTGTTATTTTAGAAGATCCTA
GTGCCCTCGATGCTGTTCCGCGTCTATCCGCTGAAAAAAAAGAAGTCATTCACCGCACCATTGAGCAAAACTTAGGCTTA
GAGCGGGTCATGATTCAATTGAATGAGTGGGGATTTGGTCCACAGCTTGGGATGAAGATTTATCAAACCTATCGAACAGA
AGCCATTGAATTACTGACAGAAAATCCATACCGCTTGATTGAAGATGTGGAAGGGGTGGGTTTCTTTCGAGCCGACGAGC
TAGGTGCGAAATTAGGTATAACTGGTAAACATCCTGATCGTGTCAAAGCAGCGATTTTACATATTTTAAATACAGCAGCT
TTATCGGATGGACATGTTTATCTAGATGCAGAACAGGTTTTACCGCTCGTTAAGGAAATGCTTGAACAAAGCCAACGACA
GGAGATACCATTCGAGGATATTTCTCAAGCCTGTATCAGACTCCGTGAAGAAGGCAAAATTTGTGGTGAAGAGACAAGGT
TATATTTGCCATCACTCTATTTTTCAGAGGTAGGGATTGCATCGAAAATCTTATCGCTTATCGAGCGGAATAATAAGGCT
GAACATTTTAGTAAAGATGAAATTCGAAAAGCCATTGGAGAAACAGAGGAGCTACTCAATGTTACCTATGCAGAAACACA
AGCGAATGCCATCGAACAGGCTTTAAATTCAGCTGTTATGATTTTAACGGGTGGTCCTGGTACGGGGAAAACCACTGTTG
TACGGGGAGTCGTAGAAGTTTATGCAAAGCTTCATGGGCTATCCTTAAATCCAAAAGAGTATGCTCAAAAAGAGGAGCCT
TTTCCGATTATTCTTTGTGCGCCGACTGGACGTGCTGCTAAACGATTAGCCGAATCAACAGAGCTTCCTGCGATGACCAT
CCATCGACTGCTCGGTTTTACAGGGCAAGAAAAAGAGGAAGAAACAGAGCGGGAAGTAACAGGTAAGCTGATTATCGTGG
ATGAAATGTCAATGGTTGATACATGGCTTGCCCATCAATTATTAAAAGCTTTACATGAAGATGTTCAAGTTGTCTTTGTT
GGAGATCAGGATCAGCTTCCACCAGTAGGTCCAGGACAGGTGTTAAAGGATTTATTAGCATCCAAGCAGCTACCAACTGT
CGAGCTAACAGATGTTTATCGACAAGCAGAAGGCTCAACGATTATTGAACTTGCGCATCAAATAAAAAAAGGAACGATTC
CACAAGAGTTAACAGCTAAAACCTCTGATCGTTCGTTTATTAAGGCTTCAGCAGACCAAGTTGCCAACGTTGTTACTCAA
GTTGTCAAAAGTGCTGTCGCAAAGGGCCAGGAAATCCGTAATATTCAAGTGTTGGCGCCCATGTATAAAGGAACAGCTGG
TATAGATAATTTAAATAAAATGATTCAAGAGCTTATTAACCCAAATGATACTGGCACACGAAAAGAGCTAGTCTTTGGGG
ATGTCACCTATCGAATAAAGGATAAAGTTCTTCAGCTTGTCAATCAACCTGAAAGCAATGTCTTTAATGGAGATATGGGT
GAGGTCATTAGTATTATTAAGGCGAAAGAGACGATCGAAAAACAAGATTTACTGATCGTATCCTTTGATGGCATTGAAGT
GACCTATCAACGAAGCGACCTCAATCAATTGACACTAGCTTATTGTTGCTCCATCCATAAATCACAGGGCTCTGAGTTTC
AAACGGTCATTATGCCAGTGGTTAGAGGGTATTCCAAAATGTTACGGCGTAACCTTTTATACACAGGTATTACACGTGCT
AAAAACTTTTTGATTTTATGCGGTGAACCAGATGTGCTTGCGGATGGTTTACAACGTACAGATGACCTTCAGCGTTTCAC
CTCTTTACGTGCAAGACTTAACCCAATGGAAATTGAGGAAGAACTTGTGGAAGTCGAGGCAGTGCCAGTAGAAAATGAAG
GGATGCAGGAGCCGGTTTCCGTTGAACCAAAGCTAACAGTAGAAACAGCCCCTTATATTCATCCAATGATTGGTATGAAT
GATGTCTCTCCATATGATTTTTTGGATGACTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

AAA domain (AAA_30)

(343-550)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-660)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.451

100

0.528

Multiple sequence alignment