Detailed information NTG1097940

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: ACM1PH_RS00065
• Genome accession: NZ_CP181055
• Coordinates: 11764..14220 (+)
• Length: 818 a.a.
• NCBI ID: WP_416144498.1
• Uniprot ID: -
• Organism: Planococcus koreensis strain OC-PG-Soil
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 6764..19220

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACM1PH_RS00040 (ACM1PH_00040)	-	6930..8212 (-)	1283	Protein_6	replication-associated recombination protein A	-
ACM1PH_RS00045 (ACM1PH_00045)	cymR	8349..8765 (+)	417	WP_135500704.1	cysteine metabolism transcriptional regulator CymR	-
ACM1PH_RS00050 (ACM1PH_00050)	-	8780..9913 (+)	1134	WP_416144495.1	cysteine desulfurase family protein	-
ACM1PH_RS00055 (ACM1PH_00055)	mnmA	9928..11046 (+)	1119	WP_416144496.1	tRNA 2-thiouridine(34) synthase MnmA	-
ACM1PH_RS00060 (ACM1PH_00060)	-	11046..11720 (+)	675	WP_416144497.1	tetratricopeptide repeat protein	-
ACM1PH_RS00065 (ACM1PH_00065)	recD2	11764..14220 (+)	2457	WP_416144498.1	ATP-dependent RecD-like DNA helicase	Machinery gene
ACM1PH_RS00070 (ACM1PH_00070)	alaS	14705..17330 (+)	2626	Protein_12	alanine--tRNA ligase	-
ACM1PH_RS00075 (ACM1PH_00075)	-	17419..17691 (+)	273	WP_135500710.1	IreB family regulatory phosphoprotein	-
ACM1PH_RS00080 (ACM1PH_00080)	ruvX	17688..18106 (+)	419	Protein_14	Holliday junction resolvase RuvX	-
ACM1PH_RS00085 (ACM1PH_00085)	-	18117..18425 (+)	309	WP_135500711.1	DUF1292 domain-containing protein	-

Sequence

Protein

• Length: 818 a.a.
• Molecular weight: 90481.55 Da
• Isoelectric Point: 5.0840

>NTDB_id=1097940 ACM1PH_RS00065 WP_416144498.1 11764..14220(+) (recD2) [Planococcus koreensis strain OC-PG-Soil]
MTGQIDLFQEETHFVLGRPVVSIFHNPQNLFSIAKVKIQETNTSYQEKEIIVSGYFPKLSLEESYRFTGAVKNHPRYGVQ
FQVETFTKEVPETEQGIVHYLSSDMFNGIGRKTAETIVKKLGKDAIKKILEDPEALDAVPRLSDEKKDTIRSTLQLNLGL
ERVMIQLNDWGFGPQIGMRVYQTYREDTIDILTKNPFILIEEIEGIGFHRADELGAKLGITGSHPDRIKASILHLLNQAS
LSEGHVYVDAKTLIPQVKEMLEASQREDIPIDAISKAMIEMNEEGKVSGEETRLYLPSLYYSEVGIATKLETMLASQSNR
DRFPASEVRKALGEAEERLGVNYAETQVEAIDASINSSVMILTGGPGTGKTTVVRGLVEVYAELHGLSLDPKEYAKKKEP
FPIILAAPTGRAAKRLSESTGLPAMTIHRLLGFNGQEKDEETEKEIEGRLIIIDEMSMVDTWLAHQLLKAVPEDAQLIFV
GDQDQLPPVGPGQVLRDLLESKRIPTVELTDIYRQSSGSSIIELAHQMKNGQLPADITAKTSDRSFIKAGPDQIASVVEK
VVKSALAKGHSIKDVQVLAPMYKGPAGIDALNRMIQEMVNPNADGKRKELVFGDITYRIGDKILQLVNQPESNVFNGDMG
EVVAIMKAKETVEKQDMLVASFDGIEVEYQRSDLNQLTLAYCVSIHKSQGSEFPTVIMPIVRGYMKMLRRNLLYTGITRS
KDFLILCGDPQVFRYGVERTDDTKRMTTLKSRLQLSDAPPAPVTVEGAPEEAAAEKSAVPASEAPIQSGPASLTAENAHA
IHPLIGMEGIKPTDFIEV

Nucleotide

• Length: 2457 bp

>NTDB_id=1097940 ACM1PH_RS00065 WP_416144498.1 11764..14220(+) (recD2) [Planococcus koreensis strain OC-PG-Soil]
ATGACTGGACAAATTGATTTATTCCAAGAAGAAACGCATTTTGTACTGGGCAGGCCTGTCGTCTCGATTTTTCACAATCC
CCAAAATTTATTCTCCATCGCGAAAGTGAAAATCCAGGAAACCAATACCTCGTACCAGGAAAAAGAGATCATCGTCTCGG
GCTATTTTCCGAAATTGTCGCTTGAAGAATCCTACCGCTTTACGGGTGCGGTGAAAAACCATCCGCGCTACGGCGTCCAG
TTCCAGGTGGAAACCTTCACGAAAGAAGTGCCGGAAACAGAGCAGGGGATTGTGCATTATTTATCGAGCGATATGTTCAA
TGGCATCGGCCGCAAGACGGCGGAGACGATCGTCAAGAAACTGGGCAAAGACGCCATCAAGAAAATTCTCGAGGACCCGG
AAGCGCTCGATGCGGTGCCGCGTCTTTCCGATGAAAAAAAAGACACGATCCGTTCGACGCTGCAGCTGAATCTGGGCTTG
GAGCGCGTGATGATCCAGCTCAACGACTGGGGCTTCGGCCCGCAGATCGGCATGCGCGTCTACCAGACTTACCGCGAAGA
CACGATCGACATCCTGACGAAAAACCCGTTCATTTTGATTGAGGAAATCGAAGGGATCGGTTTCCACCGCGCGGATGAAC
TGGGCGCGAAGCTGGGCATCACCGGCAGCCATCCCGACCGCATCAAGGCATCAATTCTGCATCTGCTGAACCAGGCGTCG
CTGTCGGAAGGCCATGTCTACGTCGATGCGAAGACGCTCATCCCGCAAGTCAAAGAAATGCTGGAAGCGAGCCAGCGTGA
AGACATTCCGATCGATGCGATTTCCAAAGCGATGATTGAGATGAATGAAGAAGGCAAAGTGTCGGGAGAAGAAACCCGGC
TTTATTTGCCGTCGCTGTATTACTCGGAGGTCGGCATTGCGACAAAGCTTGAAACGATGCTGGCGTCGCAGTCGAACCGC
GACCGCTTTCCGGCTTCGGAAGTGCGGAAAGCGCTCGGCGAAGCGGAAGAGCGGCTCGGCGTCAATTATGCGGAAACCCA
AGTGGAAGCGATTGACGCGAGCATTAATTCCTCTGTCATGATTTTGACCGGCGGACCCGGCACCGGCAAGACGACCGTTG
TGCGCGGCCTTGTTGAAGTGTATGCGGAGCTTCACGGCTTGTCGCTTGATCCGAAAGAATACGCCAAGAAAAAAGAACCG
TTCCCGATCATCCTTGCAGCACCTACGGGACGCGCTGCGAAGCGCCTGAGCGAGTCGACGGGACTGCCGGCGATGACGAT
CCACCGCTTGCTTGGCTTTAATGGCCAGGAAAAAGACGAAGAAACCGAAAAAGAAATCGAAGGCCGCCTGATCATCATCG
ATGAAATGTCGATGGTCGATACGTGGCTTGCGCACCAATTGCTGAAAGCGGTGCCGGAGGATGCCCAGCTTATTTTCGTC
GGCGACCAGGACCAGCTGCCGCCCGTCGGCCCTGGCCAAGTGCTGCGCGACCTGCTTGAATCGAAGCGCATTCCGACAGT
GGAACTGACTGATATTTACCGGCAGTCTTCTGGTTCGTCGATCATCGAGCTCGCGCACCAAATGAAAAATGGGCAGCTGC
CCGCTGACATCACCGCAAAAACATCGGACCGCTCGTTCATCAAAGCAGGCCCGGACCAGATCGCATCGGTTGTCGAGAAA
GTCGTCAAAAGCGCATTGGCAAAAGGGCATTCGATCAAAGATGTCCAAGTGCTCGCCCCGATGTATAAAGGGCCGGCCGG
GATCGATGCGCTGAACCGCATGATCCAGGAGATGGTCAACCCGAACGCCGATGGCAAACGCAAAGAGCTGGTGTTCGGCG
ACATCACGTACCGCATCGGCGACAAGATTCTGCAGCTCGTCAACCAGCCGGAAAGCAATGTCTTCAACGGTGATATGGGA
GAAGTCGTTGCTATCATGAAAGCGAAAGAGACGGTCGAGAAACAGGACATGCTCGTCGCGTCATTCGATGGCATCGAAGT
AGAGTACCAGCGCAGCGATTTGAACCAGCTGACACTTGCGTATTGCGTCTCGATCCATAAATCGCAGGGTTCGGAGTTTC
CGACGGTCATCATGCCGATCGTCCGCGGCTATATGAAAATGCTGCGCCGGAATTTATTGTATACGGGCATTACACGCAGC
AAGGATTTTCTGATCTTGTGCGGCGATCCTCAAGTGTTCCGCTACGGCGTCGAGCGCACCGACGATACAAAGCGCATGAC
GACGCTGAAAAGCCGTCTGCAGCTGTCCGACGCACCACCTGCACCGGTGACGGTTGAAGGGGCGCCAGAAGAGGCTGCAG
CGGAGAAATCGGCTGTACCAGCGAGTGAAGCGCCAATTCAATCCGGCCCCGCGAGCTTGACGGCGGAAAACGCCCACGCC
ATCCATCCGCTCATCGGCATGGAAGGCATCAAGCCGACGGATTTTATCGAAGTGTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (343-550)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (591-652)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (680-727)

• Helix-hairpin-helix containing domain (HHH_RecD2) (159-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	54.064	99.267	0.537